Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-231 |
| Cow position: | chr3:74724108-74723871 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 1-234 |
| Cow position: | chr3:1549644-1549881 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 67, 150 |
| Conread position: | 1-235 |
| Cow position: | chr3:12311407-12311649 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 67, 119 |
| Conread position: | 1-235 |
| Cow position: | chr3:64081799-64082026 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 79, 43 |
| Conread position: | 1-241 |
| Cow position: | chr3:60854511-60854266 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 68, 153 |
| Conread position: | 2-159 |
| Cow position: | chr3:56164099-56164261 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 67, 94 |
| Conread position: | 2-164 |
| Cow position: | chr3:32513778-32513616 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 126, 67 |
| Conread position: | 2-171 |
| Cow position: | chr3:47497852-47498024 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 22, 104 |
| Conread position: | 2-177 |
| Cow position: | chr3:6798661-6798485 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 125, 80 |
| Conread position: | 2-221 |
| Cow position: | chr3:13526962-13527178 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 125, 73 |
| Conread position: | 2-223 |
| Cow position: | chr3:79315515-79315734 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 170 |
| Conread position: | 2-227 |
| Cow position: | chr3:27633676-27633441 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 188 |
| Conread position: | 2-227 |
| Cow position: | chr3:34165316-34165090 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 109 |
| Conread position: | 2-229 |
| Cow position: | chr3:15091214-15091431 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 82, 24 |
| Conread position: | 2-230 |
| Cow position: | chr3:21332475-21332254 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 2-232 |
| Cow position: | chr3:26581741-26581502 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 52 |
| Conread position: | 2-232 |
| Cow position: | chr3:68127432-68127655 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 126, 29 |
| Conread position: | 2-233 |
| Cow position: | chr3:23478565-23478800 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 2-234 |
| Cow position: | chr3:24532152-24532392 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 67, 183 |
| Conread position: | 2-234 |
| Cow position: | chr3:50499909-50500129 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 196, 120 |
| Conread position: | 2-234 |
| Cow position: | chr3:58348810-58349034 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 125, 67 |
| Conread position: | 2-234 |
| Cow position: | chr3:77589728-77589954 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 128, 34 |
| Conread position: | 2-235 |
| Cow position: | chr3:12531785-12531546 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 81, 183 |
| Conread position: | 2-235 |
| Cow position: | chr3:54329013-54328789 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 90, 56 |
| Conread position: | 2-235 |
| Cow position: | chr3:56042386-56042157 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 2-235 |
| Cow position: | chr3:60947858-60947626 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 2-235 |
| Cow position: | chr3:73154294-73154519 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 84, 23 |
| Conread position: | 2-236 |
| Cow position: | chr3:63334374-63334139 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 2-239 |
| Cow position: | chr3:31528173-31528399 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 188 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 65, 21 |
| Conread position: | 2-242 |
| Cow position: | chr3:5084794-5084566 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 111, 32 |
| Conread position: | 2-245 |
| Cow position: | chr3:43004471-43004220 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 56 |
| Conread position: | 2-246 |
| Cow position: | chr3:22054289-22054055 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 127, 32 |
| Conread position: | 2-246 |
| Cow position: | chr3:23274634-23274388 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 194 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 48, 57 |
| Conread position: | 2-248 |
| Cow position: | chr3:2285023-2285269 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 67, 33 |
| Conread position: | 2-248 |
| Cow position: | chr3:3690362-3690130 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 90, 40 |
| Conread position: | 2-248 |
| Cow position: | chr3:17519456-17519213 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 2-248 |
| Cow position: | chr3:45641841-45642078 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 86, 39 |
| Conread position: | 2-251 |
| Cow position: | chr3:78442554-78442297 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 184 |
| Conread position: | 2-276 |
| Cow position: | chr3:8753799-8754067 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 126, 38 |
| Conread position: | 3-220 |
| Cow position: | chr3:43967077-43966865 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 76, 100 |
| Conread position: | 3-233 |
| Cow position: | chr3:39385765-39385541 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 65 |
| Conread position: | 3-237 |
| Cow position: | chr3:32773528-32773766 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 73, 184 |
| Conread position: | 3-243 |
| Cow position: | chr3:77468290-77468539 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 4-247 |
| Cow position: | chr3:52657833-52658073 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 6 |
| Conread position: | 5-235 |
| Cow position: | chr3:1339241-1339474 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 177 |
| Conread position: | 5-235 |
| Cow position: | chr3:62812640-62812413 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 38 |
| Conread position: | 6-231 |
| Cow position: | chr3:52817339-52817569 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 79, 60 |
| Conread position: | 6-233 |
| Cow position: | chr3:27347025-27346794 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 105 |
| Conread position: | 6-271 |
| Cow position: | chr3:36515009-36514756 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 192, 30 |
| Conread position: | 11-225 |
| Cow position: | chr3:82543857-82544067 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 116, 71 |
| Conread position: | 17-242 |
| Cow position: | chr3:31286552-31286327 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 20-168 |
| Cow position: | chr3:27879577-27879423 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 38-215 |
| Cow position: | chr3:69148172-69147991 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 38-247 |
| Cow position: | chr3:45735545-45735760 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 10, 145 |
| Conread position: | 60-230 |
| Cow position: | chr3:74436303-74436475 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 122 |
| Conread position: | 60-240 |
| Cow position: | chr3:41860972-41860786 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 64-235 |
| Cow position: | chr3:18851784-18851949 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 68-232 |
| Cow position: | chr3:5317363-5317192 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 16, 118 |
| Conread position: | 74-235 |
| Cow position: | chr3:36538493-36538320 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 74-248 |
| Cow position: | chr3:49414339-49414167 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 124, 9 |
| Conread position: | 76-221 |
| Cow position: | chr3:83393120-83392973 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 13 |
Show alignments to all cow chromosomes.