Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-226 |
| Cow position: | chr4:34572169-34571951 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 130, 28 |
| Conread position: | 1-235 |
| Cow position: | chr4:31003006-31002768 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 30 |
| Conread position: | 2-127 |
| Cow position: | chr4:24713305-24713174 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 2-146 |
| Cow position: | chr4:51905622-51905773 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 2-151 |
| Cow position: | chr4:63875731-63875584 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 2-175 |
| Cow position: | chr4:58856157-58855981 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 2-175 |
| Cow position: | chr4:62407512-62407683 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 138, 40 |
| Conread position: | 2-193 |
| Cow position: | chr4:4192552-4192741 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 2-202 |
| Cow position: | chr4:20925661-20925459 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 125, 195 |
| Conread position: | 2-207 |
| Cow position: | chr4:47511379-47511589 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 65, 116 |
| Conread position: | 2-221 |
| Cow position: | chr4:27505475-27505687 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 72, 56 |
| Conread position: | 2-232 |
| Cow position: | chr4:5886691-5886919 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 126, 77 |
| Conread position: | 2-234 |
| Cow position: | chr4:5188655-5188422 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 2-234 |
| Cow position: | chr4:54347554-54347779 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 73, 52 |
| Conread position: | 2-234 |
| Cow position: | chr4:57652562-57652803 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 2-236 |
| Cow position: | chr4:57565867-57565634 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 180 |
| Conread position: | 2-237 |
| Cow position: | chr4:22507028-22506792 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 67, 138 |
| Conread position: | 2-238 |
| Cow position: | chr4:49741913-49742151 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 82, 183 |
| Conread position: | 2-239 |
| Cow position: | chr4:45401008-45401239 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 124, 40 |
| Conread position: | 2-240 |
| Cow position: | chr4:4519504-4519742 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 125, 36 |
| Conread position: | 2-242 |
| Cow position: | chr4:9128090-9128342 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 73, 24 |
| Conread position: | 2-245 |
| Cow position: | chr4:34043267-34043005 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 67, 196 |
| Conread position: | 2-246 |
| Cow position: | chr4:25924607-25924362 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 125, 66 |
| Conread position: | 2-246 |
| Cow position: | chr4:58873604-58873839 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 75, 33 |
| Conread position: | 2-248 |
| Cow position: | chr4:41975366-41975123 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 101 |
| Conread position: | 2-249 |
| Cow position: | chr4:31586247-31586002 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 70, 36 |
| Conread position: | 2-250 |
| Cow position: | chr4:2443545-2443293 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 2-269 |
| Cow position: | chr4:32140921-32140655 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 105, 28 |
| Conread position: | 3-188 |
| Cow position: | chr4:9089728-9089539 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 174 |
| Conread position: | 3-233 |
| Cow position: | chr4:58432616-58432380 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 64, 5 |
| Conread position: | 3-234 |
| Cow position: | chr4:6629970-6629744 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 79, 103 |
| Conread position: | 3-241 |
| Cow position: | chr4:36759632-36759879 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 186 |
| Conread position: | 3-246 |
| Cow position: | chr4:53641670-53641911 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 145, 28 |
| Conread position: | 4-233 |
| Cow position: | chr4:9822506-9822733 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 5-233 |
| Cow position: | chr4:57221867-57221631 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 81, 183 |
| Conread position: | 6-230 |
| Cow position: | chr4:15046234-15046465 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 70, 181 |
| Conread position: | 7-234 |
| Cow position: | chr4:58830505-58830291 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 191, 10 |
| Conread position: | 12-248 |
| Cow position: | chr4:59809589-59809356 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 62, 130 |
| Conread position: | 14-209 |
| Cow position: | chr4:4029191-4029392 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 14-239 |
| Cow position: | chr4:49881628-49881402 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 54, 143 |
| Conread position: | 26-225 |
| Cow position: | chr4:52597181-52596971 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 36-252 |
| Cow position: | chr4:5784105-5784317 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 60-234 |
| Cow position: | chr4:67321506-67321676 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 139, 38 |
| Conread position: | 90-235 |
| Cow position: | chr4:60639774-60639627 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 91-221 |
| Cow position: | chr4:6793927-6794058 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 133-246 |
| Cow position: | chr4:30792422-30792533 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 65, 46 |
Show alignments to all cow chromosomes.