Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-231 |
| Cow position: | chr5:57490534-57490770 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 89, 185 |
| Conread position: | 2-163 |
| Cow position: | chr5:56109777-56109605 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 2-176 |
| Cow position: | chr5:34483160-34482983 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 18 |
| Conread position: | 2-188 |
| Cow position: | chr5:13575367-13575180 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 2-194 |
| Cow position: | chr5:20717507-20717693 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 2-195 |
| Cow position: | chr5:39206911-39206714 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 2-208 |
| Cow position: | chr5:1286744-1286957 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 66, 118 |
| Conread position: | 2-227 |
| Cow position: | chr5:56826425-56826654 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 2-232 |
| Cow position: | chr5:1304840-1304612 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 93, 61 |
| Conread position: | 2-233 |
| Cow position: | chr5:23234854-23235077 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 2-233 |
| Cow position: | chr5:28770641-28770872 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 81, 18 |
| Conread position: | 2-234 |
| Cow position: | chr5:27493117-27493352 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 2-235 |
| Cow position: | chr5:12329310-12329079 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 67, 35 |
| Conread position: | 2-235 |
| Cow position: | chr5:50159611-50159837 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 129, 47 |
| Conread position: | 2-235 |
| Cow position: | chr5:71279032-71279266 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 62, 154 |
| Conread position: | 2-236 |
| Cow position: | chr5:58842494-58842721 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 114, 70 |
| Conread position: | 2-239 |
| Cow position: | chr5:67463596-67463836 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 2-241 |
| Cow position: | chr5:9025560-9025806 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 2-242 |
| Cow position: | chr5:19299094-19298850 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 126, 86 |
| Conread position: | 2-245 |
| Cow position: | chr5:33516400-33516144 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 47, 191 |
| Conread position: | 2-246 |
| Cow position: | chr5:53922168-53921928 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 66, 149 |
| Conread position: | 2-249 |
| Cow position: | chr5:29029722-29029977 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 144 |
| Conread position: | 2-253 |
| Cow position: | chr5:15808537-15808286 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 2-256 |
| Cow position: | chr5:29431272-29431030 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 2-270 |
| Cow position: | chr5:20648877-20648608 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 3-182 |
| Cow position: | chr5:45911912-45911738 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 124, 39 |
| Conread position: | 3-195 |
| Cow position: | chr5:60968817-60969017 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 20 |
| Conread position: | 3-225 |
| Cow position: | chr5:35748926-35749146 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 3-234 |
| Cow position: | chr5:47698006-47697771 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 73, 127 |
| Conread position: | 3-235 |
| Cow position: | chr5:21145846-21145608 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 71, 28 |
| Conread position: | 3-249 |
| Cow position: | chr5:63620936-63621188 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 123, 28 |
| Conread position: | 3-269 |
| Cow position: | chr5:51953257-51953529 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 65, 115 |
| Conread position: | 5-248 |
| Cow position: | chr5:54157832-54158080 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 56, 182 |
| Conread position: | 6-233 |
| Cow position: | chr5:26098292-26098072 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 72, 91 |
| Conread position: | 8-210 |
| Cow position: | chr5:18379640-18379835 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 122, 47 |
| Conread position: | 9-235 |
| Cow position: | chr5:12581096-12581311 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 120, 5 |
| Conread position: | 9-248 |
| Cow position: | chr5:33570255-33570482 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 145, 33 |
| Conread position: | 10-234 |
| Cow position: | chr5:26562531-26562753 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 73, 44 |
| Conread position: | 10-235 |
| Cow position: | chr5:14072188-14071964 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 83, 44 |
| Conread position: | 10-236 |
| Cow position: | chr5:57964910-57964695 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 185, 72 |
| Conread position: | 13-234 |
| Cow position: | chr5:27679437-27679205 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 12, 30 |
| Conread position: | 13-242 |
| Cow position: | chr5:56742051-56742297 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 68, 18 |
| Conread position: | 14-248 |
| Cow position: | chr5:67579447-67579684 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 102 |
| Conread position: | 15-235 |
| Cow position: | chr5:66117154-66116937 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 64, 118 |
| Conread position: | 17-227 |
| Cow position: | chr5:11235980-11236191 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 109, 75 |
| Conread position: | 17-234 |
| Cow position: | chr5:37624470-37624693 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 58, 97 |
| Conread position: | 18-234 |
| Cow position: | chr5:12602293-12602510 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 20-235 |
| Cow position: | chr5:9232868-9232657 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 44, 133 |
| Conread position: | 22-231 |
| Cow position: | chr5:25355410-25355612 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 33-194 |
| Cow position: | chr5:31944004-31944169 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 152 |
| Conread position: | 37-234 |
| Cow position: | chr5:58384704-58384905 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 139 |
| Conread position: | 41-245 |
| Cow position: | chr5:9585331-9585122 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 28, 150 |
| Conread position: | 43-235 |
| Cow position: | chr5:42587485-42587288 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 35, 134 |
| Conread position: | 54-233 |
| Cow position: | chr5:62580418-62580595 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 55-235 |
| Cow position: | chr5:65590670-65590489 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 57-209 |
| Cow position: | chr5:15882011-15881859 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 65-231 |
| Cow position: | chr5:51076177-51076009 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 76 |
| Conread position: | 65-241 |
| Cow position: | chr5:31461650-31461837 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 16, 122 |
| Conread position: | 73-237 |
| Cow position: | chr5:36156898-36157070 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 74-246 |
| Cow position: | chr5:67001895-67002070 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 109 |
| Conread position: | 84-233 |
| Cow position: | chr5:57629828-57629677 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 45, 98 |
| Conread position: | 99-236 |
| Cow position: | chr5:59640054-59640193 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 113-248 |
| Cow position: | chr5:60472082-60471946 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 69 |
| Conread position: | 131-241 |
| Cow position: | chr5:10785015-10784905 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 67, 48 |
Show alignments to all cow chromosomes.