Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-233 |
| Cow position: | chr6:1077021-1076787 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 1-245 |
| Cow position: | chr6:35698017-35697772 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 8, 34 |
| Conread position: | 2-153 |
| Cow position: | chr6:3374024-3373862 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 2-163 |
| Cow position: | chr6:41157626-41157788 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 90, 49 |
| Conread position: | 2-176 |
| Cow position: | chr6:5500666-5500485 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 58, 44 |
| Conread position: | 2-191 |
| Cow position: | chr6:55662130-55662325 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 26, 146 |
| Conread position: | 2-218 |
| Cow position: | chr6:34556910-34557128 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 2-228 |
| Cow position: | chr6:44389848-44389620 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 2-230 |
| Cow position: | chr6:24496530-24496298 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 98, 182 |
| Conread position: | 2-231 |
| Cow position: | chr6:23891951-23892184 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 31, 105 |
| Conread position: | 2-232 |
| Cow position: | chr6:14280053-14280292 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 31, 187 |
| Conread position: | 2-232 |
| Cow position: | chr6:19715842-19715612 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 2-233 |
| Cow position: | chr6:41557882-41558116 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 178 |
| Conread position: | 2-234 |
| Cow position: | chr6:31687789-31687558 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 169 |
| Conread position: | 2-234 |
| Cow position: | chr6:55398204-55398431 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 2-235 |
| Cow position: | chr6:3017869-3018103 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 72, 18 |
| Conread position: | 2-235 |
| Cow position: | chr6:6722543-6722778 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 60, 156 |
| Conread position: | 2-235 |
| Cow position: | chr6:20332709-20332943 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 159 |
| Conread position: | 2-236 |
| Cow position: | chr6:40241086-40241317 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 75, 126 |
| Conread position: | 2-236 |
| Cow position: | chr6:50501996-50502227 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 79 |
| Conread position: | 2-239 |
| Cow position: | chr6:54296027-54296251 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 53 |
| Conread position: | 2-242 |
| Cow position: | chr6:27711029-27711274 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 67, 179 |
| Conread position: | 2-244 |
| Cow position: | chr6:45617028-45616793 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 194, 29 |
| Conread position: | 2-248 |
| Cow position: | chr6:6635543-6635790 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 3-233 |
| Cow position: | chr6:62327943-62328172 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 168 |
| Conread position: | 3-238 |
| Cow position: | chr6:29078133-29078366 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 66, 8 |
| Conread position: | 4-227 |
| Cow position: | chr6:62754089-62753870 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 149 |
| Conread position: | 4-242 |
| Cow position: | chr6:35126704-35126471 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 27 |
| Conread position: | 5-194 |
| Cow position: | chr6:35831956-35832146 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 6-248 |
| Cow position: | chr6:14162209-14161970 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 7-233 |
| Cow position: | chr6:4666094-4665874 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 119, 24 |
| Conread position: | 8-207 |
| Cow position: | chr6:37085297-37085500 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 176 |
| Conread position: | 10-194 |
| Cow position: | chr6:39917574-39917759 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 21, 62 |
| Conread position: | 13-234 |
| Cow position: | chr6:53416547-53416320 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 14, 172 |
| Conread position: | 14-244 |
| Cow position: | chr6:1940086-1939845 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 67, 169 |
| Conread position: | 26-234 |
| Cow position: | chr6:45692241-45692033 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 105, 58 |
| Conread position: | 38-248 |
| Cow position: | chr6:3741916-3742118 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 40-241 |
| Cow position: | chr6:15261024-15261231 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 40-241 |
| Cow position: | chr6:15262069-15262276 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 41-232 |
| Cow position: | chr6:20748822-20749018 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 39, 134 |
| Conread position: | 44-233 |
| Cow position: | chr6:58593705-58593512 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 36, 131 |
| Conread position: | 49-204 |
| Cow position: | chr6:23932541-23932394 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 149, 31 |
| Conread position: | 53-232 |
| Cow position: | chr6:3936170-3935993 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 75, 21 |
| Conread position: | 60-237 |
| Cow position: | chr6:24260354-24260171 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 127 |
| Conread position: | 74-235 |
| Cow position: | chr6:5678562-5678403 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 78-234 |
| Cow position: | chr6:18562113-18561962 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 78-235 |
| Cow position: | chr6:26692646-26692494 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 120, 46 |
| Conread position: | 83-233 |
| Cow position: | chr6:69274064-69273909 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 103 |
| Conread position: | 84-235 |
| Cow position: | chr6:16495129-16494976 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 71, 65 |
| Conread position: | 84-238 |
| Cow position: | chr6:35266006-35265857 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 113, 87 |
| Conread position: | 87-231 |
| Cow position: | chr6:13092589-13092443 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 86 |
| Conread position: | 89-234 |
| Cow position: | chr6:47547540-47547682 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 110, 36 |
| Conread position: | 91-244 |
| Cow position: | chr6:28008965-28008811 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 96-236 |
| Cow position: | chr6:62082793-62082927 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 102, 29 |
| Conread position: | 97-235 |
| Cow position: | chr6:24337576-24337436 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 32, 85 |
| Conread position: | 101-233 |
| Cow position: | chr6:27457725-27457862 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 81 |
Show alignments to all cow chromosomes.