Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047C15.3 |
| Conread position: | 1-232 |
| Cow position: | chr9:15855374-15855604 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 1-234 |
| Cow position: | chr9:13072029-13071793 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 72, 130 |
| Conread position: | 2-194 |
| Cow position: | chr9:9077442-9077624 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 2-195 |
| Cow position: | chr9:4985701-4985897 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 29 |
| Conread position: | 2-209 |
| Cow position: | chr9:45140559-45140346 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 67, 156 |
| Conread position: | 2-221 |
| Cow position: | chr9:7670280-7670067 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 135, 34 |
| Conread position: | 2-232 |
| Cow position: | chr9:38698153-38697924 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 76, 34 |
| Conread position: | 2-233 |
| Cow position: | chr9:1527134-1527369 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 182 |
| Conread position: | 2-234 |
| Cow position: | chr9:18570722-18570956 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 178 |
| Conread position: | 2-234 |
| Cow position: | chr9:34763188-34763427 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 185 |
| Conread position: | 2-234 |
| Cow position: | chr9:41318318-41318556 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 2-235 |
| Cow position: | chr9:2638655-2638888 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 49, 172 |
| Conread position: | 2-235 |
| Cow position: | chr9:19835725-19835961 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 77, 6 |
| Conread position: | 2-235 |
| Cow position: | chr9:22376928-22376690 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 67, 181 |
| Conread position: | 2-235 |
| Cow position: | chr9:26585373-26585148 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 2-242 |
| Cow position: | chr9:56411462-56411695 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 125, 51 |
| Conread position: | 2-248 |
| Cow position: | chr9:25502844-25503084 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 126, 40 |
| Conread position: | 2-250 |
| Cow position: | chr9:12183390-12183141 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 180 |
| Conread position: | 3-241 |
| Cow position: | chr9:15282838-15282598 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 65, 165 |
| Conread position: | 6-242 |
| Cow position: | chr9:23294298-23294068 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 9-235 |
| Cow position: | chr9:1517634-1517859 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 10-249 |
| Cow position: | chr9:4834638-4834403 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 11-177 |
| Cow position: | chr9:58125837-58125665 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 11-240 |
| Cow position: | chr9:40923000-40923229 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 68, 23 |
| Conread position: | 13-207 |
| Cow position: | chr9:6557479-6557280 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 70, 98 |
| Conread position: | 14-202 |
| Cow position: | chr9:19081946-19082134 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 15-235 |
| Cow position: | chr9:8234260-8234041 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 41 |
| Conread position: | 15-246 |
| Cow position: | chr9:34188635-34188402 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 16-233 |
| Cow position: | chr9:39994110-39994331 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 20-234 |
| Cow position: | chr9:64606090-64606305 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 54, 11 |
| Conread position: | 23-215 |
| Cow position: | chr9:12199266-12199460 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 58, 19 |
| Conread position: | 28-234 |
| Cow position: | chr9:55203021-55203225 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 31-230 |
| Cow position: | chr9:62721203-62721406 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 55, 154 |
| Conread position: | 36-167 |
| Cow position: | chr9:14373748-14373611 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 41-194 |
| Cow position: | chr9:42366453-42366297 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 55-237 |
| Cow position: | chr9:6109523-6109337 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 121 |
| Conread position: | 58-233 |
| Cow position: | chr9:33257061-33256895 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 65-232 |
| Cow position: | chr9:56795122-56795286 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 67-216 |
| Cow position: | chr9:26033683-26033830 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 116 |
| Conread position: | 67-244 |
| Cow position: | chr9:35795029-35794851 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 64, 15 |
| Conread position: | 76-240 |
| Cow position: | chr9:416871-416706 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 50, 76 |
| Conread position: | 82-235 |
| Cow position: | chr9:8779660-8779808 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 115, 31 |
| Conread position: | 82-247 |
| Cow position: | chr9:5622459-5622626 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 47, 100 |
| Conread position: | 84-242 |
| Cow position: | chr9:48076142-48076303 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 44, 98 |
| Conread position: | 89-240 |
| Cow position: | chr9:52725804-52725954 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 95-233 |
| Cow position: | chr9:35527060-35526920 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 109-245 |
| Cow position: | chr9:37301901-37301764 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 73 |
| Conread position: | 129-247 |
| Cow position: | chr9:6140327-6140209 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 68, 50 |
Show alignments to all cow chromosomes.