Cow genome map

Conread name: Ss1.1-Pig4-TMW8047C15.3

Conread position: 1-231
Cow position: chrX:23253822-23253594 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 181
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 71, 30

Conread position: 1-249
Cow position: chrX:11675460-11675718 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 199
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 91, 183

Conread position: 2-125
Cow position: chrX:24951979-24951855 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 52

Conread position: 2-168
Cow position: chrX:2700718-2700547 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 49, 166

Conread position: 2-207
Cow position: chrX:956875-957086 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 73, 29

Conread position: 2-207
Cow position: chrX:21885719-21885501 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 0

Conread position: 2-219
Cow position: chrX:37956951-37957174 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 170
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 75, 27

Conread position: 2-229
Cow position: chrX:37749040-37749277 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 67, 186

Conread position: 2-233
Cow position: chrX:18699968-18699735 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 178
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 54, 88

Conread position: 2-234
Cow position: chrX:1330406-1330173 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 179
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 76, 29

Conread position: 2-234
Cow position: chrX:37980778-37981008 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 181
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 71, 40

Conread position: 2-235
Cow position: chrX:5956944-5956713 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 184
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 126, 80

Conread position: 2-235
Cow position: chrX:9910362-9910132 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 40

Conread position: 2-235
Cow position: chrX:40353698-40353934 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 183
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 67, 34

Conread position: 2-237
Cow position: chrX:4601252-4601026 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 82, 22

Conread position: 2-237
Cow position: chrX:19017853-19017609 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 75, 190

Conread position: 2-237
Cow position: chrX:19127245-19127015 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 187
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 66, 34

Conread position: 2-237
Cow position: chrX:20505098-20505333 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 24

Conread position: 2-240
Cow position: chrX:25106613-25106835 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 47

Conread position: 2-241
Cow position: chrX:4019540-4019284 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 66, 45

Conread position: 2-242
Cow position: chrX:25453572-25453805 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 187
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 127, 8

Conread position: 2-247
Cow position: chrX:4630984-4630736 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 190
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 85, 40

Conread position: 2-247
Cow position: chrX:18814558-18814813 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 186
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 66, 239

Conread position: 2-248
Cow position: chrX:2147708-2147947 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 188
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 196, 29

Conread position: 2-248
Cow position: chrX:13403355-13403110 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 191
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 79, 165

Conread position: 2-257
Cow position: chrX:27458342-27458090 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 187
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 45, 173

Conread position: 4-228
Cow position: chrX:4625299-4625532 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 72, 159

Conread position: 4-236
Cow position: chrX:6672170-6672406 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 22

Conread position: 4-245
Cow position: chrX:4440240-4440486 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 70, 184

Conread position: 4-245
Cow position: chrX:37236398-37236636 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 197
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 64, 10

Conread position: 4-249
Cow position: chrX:6472101-6472351 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 72, 39

Conread position: 7-234
Cow position: chrX:12688682-12688451 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 176
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 67, 23

Conread position: 7-236
Cow position: chrX:2186650-2186883 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 180
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 73, 23

Conread position: 8-248
Cow position: chrX:4590345-4590588 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 195
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 66, 27

Conread position: 9-174
Cow position: chrX:4948101-4947932 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 75, 0

Conread position: 11-234
Cow position: chrX:35552746-35552964 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 69, 22

Conread position: 11-247
Cow position: chrX:11851368-11851137 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 172
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 116, 38

Conread position: 11-247
Cow position: chrX:18518438-18518674 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 31

Conread position: 13-233
Cow position: chrX:12227374-12227588 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 162
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 61, 28

Conread position: 13-234
Cow position: chrX:11982990-11983209 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 172
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 7, 31

Conread position: 15-149
Cow position: chrX:28939190-28939322 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 21-235
Cow position: chrX:16817058-16817267 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 164
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 177, 128

Conread position: 33-248
Cow position: chrX:40350322-40350540 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 36, 112

Conread position: 36-228
Cow position: chrX:1427693-1427893 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 33, 143

Conread position: 37-233
Cow position: chrX:30784978-30785179 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 32, 17

Conread position: 41-196
Cow position: chrX:25921368-25921217 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 126
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 13

Conread position: 42-236
Cow position: chrX:32456212-32456390 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 39, 0

Conread position: 46-235
Cow position: chrX:7022533-7022719 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 152, 43

Conread position: 68-235
Cow position: chrX:25653542-25653711 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 59, 114

Conread position: 70-233
Cow position: chrX:19391813-19391650 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 138
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 46, 12

Conread position: 75-230
Cow position: chrX:34035606-34035763 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 54, 105

Conread position: 83-239
Cow position: chrX:24286532-24286686 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 130
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 65

Conread position: 87-222
Cow position: chrX:30729307-30729170 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 40, 95

Conread position: 87-233
Cow position: chrX:503087-502939 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 95

Conread position: 89-235
Cow position: chrX:24886317-24886169 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 93

Conread position: 105-241
Cow position: chrX:8557698-8557561 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 75

Show alignments to all cow chromosomes.