Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047D10.3 |
| Conread position: | 5-159 |
| Cow position: | chr12:48223552-48223705 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 44 |
| Conread position: | 6-273 |
| Cow position: | chr12:12294748-12295024 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 145, 19 |
| Conread position: | 9-265 |
| Cow position: | chr12:3179592-3179847 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 94, 85 |
| Conread position: | 18-222 |
| Cow position: | chr12:27930525-27930322 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-222 |
| Cow position: | chr12:31332096-31331893 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 18-265 |
| Cow position: | chr12:1407061-1407311 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-265 |
| Cow position: | chr12:21200974-21201223 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 141, 170 |
| Conread position: | 18-266 |
| Cow position: | chr12:25261284-25261036 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-274 |
| Cow position: | chr12:251610-251355 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 34-221 |
| Cow position: | chr12:18467036-18467227 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 34-222 |
| Cow position: | chr12:3718029-3717839 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 34-222 |
| Cow position: | chr12:11100492-11100679 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-235 |
| Cow position: | chr12:25095296-25095097 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 124, 34 |
| Conread position: | 34-238 |
| Cow position: | chr12:27514909-27515112 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 34-265 |
| Cow position: | chr12:24030700-24030468 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 125, 220 |
| Conread position: | 34-274 |
| Cow position: | chr12:42857282-42857042 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 185, 129 |
| Conread position: | 34-277 |
| Cow position: | chr12:2768870-2769105 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 124, 69 |
| Conread position: | 34-489 |
| Cow position: | chr12:21291671-21292133 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 24 |
| Conread position: | 35-222 |
| Cow position: | chr12:36212498-36212688 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 35-230 |
| Cow position: | chr12:21129285-21129473 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 36-220 |
| Cow position: | chr12:15775651-15775837 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-221 |
| Cow position: | chr12:1404516-1404703 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 111, 38 |
| Conread position: | 36-222 |
| Cow position: | chr12:3363189-3363376 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 123, 47 |
| Conread position: | 36-222 |
| Cow position: | chr12:14213924-14213736 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr12:22571095-22571278 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 36-222 |
| Cow position: | chr12:24993724-24993536 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr12:25267090-25266902 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr12:32655802-32655986 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 36-222 |
| Cow position: | chr12:33926276-33926088 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr12:34175601-34175788 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 123, 52 |
| Conread position: | 36-222 |
| Cow position: | chr12:37561255-37561440 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 49-266 |
| Cow position: | chr12:8890785-8890566 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 105-225 |
| Cow position: | chr12:15079912-15080029 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 292-719 |
| Cow position: | chr12:27515235-27515682 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 280 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 5, 173 |
| Conread position: | 307-572 |
| Cow position: | chr12:5550484-5550204 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 70, 245 |
| Conread position: | 312-767 |
| Cow position: | chr12:29715554-29715089 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 62, 124 |
| Conread position: | 313-574 |
| Cow position: | chr12:15080207-15080468 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 222 |
| Conread position: | 313-584 |
| Cow position: | chr12:20124916-20124628 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 63, 104 |
| Conread position: | 331-580 |
| Cow position: | chr12:62592-62333 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 161 |
| Conread position: | 331-580 |
| Cow position: | chr12:38892978-38893237 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 591-1005 |
| Cow position: | chr12:42193154-42193574 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 53, 108 |
| Conread position: | 687-999 |
| Cow position: | chr12:18097325-18097029 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 688-1029 |
| Cow position: | chr12:20124480-20124143 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 700-997 |
| Cow position: | chr12:13376647-13376365 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 730-996 |
| Cow position: | chr12:36004322-36004058 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 141, 163 |
| Conread position: | 731-979 |
| Cow position: | chr12:8728195-8728443 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 144 |
| Conread position: | 802-1004 |
| Cow position: | chr12:39136299-39136098 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 178, 70 |
Show alignments to all cow chromosomes.