Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047D10.3 |
| Conread position: | 5-222 |
| Cow position: | chr17:19980024-19979811 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 18-222 |
| Cow position: | chr17:13930002-13930208 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 90, 76 |
| Conread position: | 18-265 |
| Cow position: | chr17:6261973-6262221 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-265 |
| Cow position: | chr17:11085568-11085321 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 217, 145 |
| Conread position: | 18-265 |
| Cow position: | chr17:28026381-28026130 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 141, 170 |
| Conread position: | 34-220 |
| Cow position: | chr17:8365727-8365926 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 34-221 |
| Cow position: | chr17:14294418-14294231 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-221 |
| Cow position: | chr17:24310972-24311157 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 34-222 |
| Cow position: | chr17:1570259-1570073 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 34-222 |
| Cow position: | chr17:1785873-1785686 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 34-222 |
| Cow position: | chr17:4062463-4062646 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 34-222 |
| Cow position: | chr17:11381064-11380873 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 125, 89 |
| Conread position: | 34-222 |
| Cow position: | chr17:35300406-35300221 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 34-222 |
| Cow position: | chr17:41411977-41412165 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 65, 56 |
| Conread position: | 34-241 |
| Cow position: | chr17:5999362-5999151 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 92 |
| Conread position: | 34-265 |
| Cow position: | chr17:136767-137000 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 61 |
| Conread position: | 34-265 |
| Cow position: | chr17:25738424-25738658 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-266 |
| Cow position: | chr17:3606591-3606352 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 35-222 |
| Cow position: | chr17:2245917-2245730 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 133, 39 |
| Conread position: | 35-222 |
| Cow position: | chr17:8210782-8210968 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 35-222 |
| Cow position: | chr17:19216580-19216393 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 68, 59 |
| Conread position: | 35-222 |
| Cow position: | chr17:21420079-21420265 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 99 |
| Conread position: | 35-253 |
| Cow position: | chr17:451963-452176 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 35-273 |
| Cow position: | chr17:13200650-13200892 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 49, 112 |
| Conread position: | 36-220 |
| Cow position: | chr17:43146446-43146260 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 107, 102 |
| Conread position: | 36-222 |
| Cow position: | chr17:2264318-2264502 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:2554132-2553944 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:3742289-3742477 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:5307610-5307422 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:13418529-13418717 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:15141204-15141023 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:15437924-15438112 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:15709864-15709676 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:17257648-17257836 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:21768982-21768798 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:23322298-23322111 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:29825836-29825648 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 36-222 |
| Cow position: | chr17:34574887-34575075 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 37-222 |
| Cow position: | chr17:14214907-14214720 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 308-584 |
| Cow position: | chr17:11940639-11940907 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 313-586 |
| Cow position: | chr17:36000224-35999951 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 59 |
| Conread position: | 659-994 |
| Cow position: | chr17:31949663-31949322 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 686-1000 |
| Cow position: | chr17:41705065-41704750 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 83, 242 |
| Conread position: | 705-981 |
| Cow position: | chr17:37460311-37460584 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 209 |
| Conread position: | 707-995 |
| Cow position: | chr17:22500325-22500611 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 53, 69 |
| Conread position: | 721-1002 |
| Cow position: | chr17:41813392-41813672 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 147 |
| Conread position: | 722-982 |
| Cow position: | chr17:8859678-8859428 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 41, 78 |
| Conread position: | 730-1030 |
| Cow position: | chr17:40054218-40054508 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 159, 35 |
| Conread position: | 759-983 |
| Cow position: | chr17:27434623-27434847 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 146, 114 |
| Conread position: | 759-990 |
| Cow position: | chr17:20213723-20213501 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 184, 111 |
| Conread position: | 759-1004 |
| Cow position: | chr17:6594319-6594556 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 19 |
| Conread position: | 777-1029 |
| Cow position: | chr17:43443479-43443229 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 785-998 |
| Cow position: | chr17:41898983-41898771 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 17 |
| Conread position: | 787-995 |
| Cow position: | chr17:41319566-41319353 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 5 |
| Conread position: | 797-1027 |
| Cow position: | chr17:11941414-11941643 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 133, 50 |
Show alignments to all cow chromosomes.