Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047D10.3 |
| Conread position: | 5-223 |
| Cow position: | chr19:7481617-7481397 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 9-222 |
| Cow position: | chr19:774946-775160 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 152, 27 |
| Conread position: | 15-215 |
| Cow position: | chr19:4302592-4302793 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 147, 86 |
| Conread position: | 18-222 |
| Cow position: | chr19:165789-165584 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 18-222 |
| Cow position: | chr19:2271782-2271579 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 18-222 |
| Cow position: | chr19:7490434-7490637 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 18-222 |
| Cow position: | chr19:39392845-39393050 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 141, 62 |
| Conread position: | 18-265 |
| Cow position: | chr19:12775456-12775706 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-265 |
| Cow position: | chr19:21338510-21338260 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 18-265 |
| Cow position: | chr19:28579357-28579117 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 201, 76 |
| Conread position: | 18-268 |
| Cow position: | chr19:33943904-33944155 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 141, 77 |
| Conread position: | 24-265 |
| Cow position: | chr19:40850147-40849904 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 135, 70 |
| Conread position: | 25-209 |
| Cow position: | chr19:5899164-5898982 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 25-265 |
| Cow position: | chr19:39183199-39182956 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 81, 70 |
| Conread position: | 25-274 |
| Cow position: | chr19:44032811-44033057 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 134, 59 |
| Conread position: | 34-217 |
| Cow position: | chr19:27608257-27608075 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 34-221 |
| Cow position: | chr19:3088971-3088782 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 34-222 |
| Cow position: | chr19:39666198-39666012 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 34-222 |
| Cow position: | chr19:44758439-44758253 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 125, 60 |
| Conread position: | 34-223 |
| Cow position: | chr19:28404219-28404028 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 34-265 |
| Cow position: | chr19:206854-207087 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-265 |
| Cow position: | chr19:1584815-1585050 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 35-224 |
| Cow position: | chr19:42305314-42305126 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 124, 103 |
| Conread position: | 35-267 |
| Cow position: | chr19:11197202-11196975 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 122, 49 |
| Conread position: | 36-222 |
| Cow position: | chr19:16318258-16318070 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr19:20610683-20610871 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 36-222 |
| Cow position: | chr19:22511422-22511237 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 36-222 |
| Cow position: | chr19:43147025-43147213 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 39-222 |
| Cow position: | chr19:9705827-9705646 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 127, 49 |
| Conread position: | 73-222 |
| Cow position: | chr19:5717249-5717103 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 89, 17 |
| Conread position: | 88-265 |
| Cow position: | chr19:36999944-36999764 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 164 |
| Conread position: | 254-558 |
| Cow position: | chr19:27209743-27209437 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 51 |
| Conread position: | 291-572 |
| Cow position: | chr19:13459407-13459112 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 292-573 |
| Cow position: | chr19:4780822-4781101 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 297-579 |
| Cow position: | chr19:44755367-44755086 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 120, 22 |
| Conread position: | 307-577 |
| Cow position: | chr19:44005003-44005277 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 307-585 |
| Cow position: | chr19:55672081-55672370 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 280 |
| Conread position: | 308-524 |
| Cow position: | chr19:17731391-17731616 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 324-583 |
| Cow position: | chr19:28403854-28403584 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 324-584 |
| Cow position: | chr19:2261714-2261449 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 58, 165 |
| Conread position: | 331-574 |
| Cow position: | chr19:7481213-7480960 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 331-580 |
| Cow position: | chr19:39695986-39696245 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 331-583 |
| Cow position: | chr19:41057-41319 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 127 |
| Conread position: | 380-614 |
| Cow position: | chr19:48680581-48680820 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 97 |
| Conread position: | 591-966 |
| Cow position: | chr19:25766395-25766782 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 266 |
| Conread position: | 688-1004 |
| Cow position: | chr19:13457439-13457124 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 688-1026 |
| Cow position: | chr19:2701433-2701087 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 56, 36 |
| Conread position: | 696-975 |
| Cow position: | chr19:48026134-48025854 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 696-981 |
| Cow position: | chr19:33641229-33641505 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 67, 11 |
| Conread position: | 696-993 |
| Cow position: | chr19:32371310-32371008 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 100 |
| Conread position: | 699-1030 |
| Cow position: | chr19:6582909-6583243 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 18, 5 |
| Conread position: | 702-1000 |
| Cow position: | chr19:39937461-39937165 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 5 |
| Conread position: | 721-1010 |
| Cow position: | chr19:8574798-8574512 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 44, 117 |
| Conread position: | 731-1013 |
| Cow position: | chr19:39641159-39641430 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 203, 28 |
| Conread position: | 733-1005 |
| Cow position: | chr19:47126637-47126906 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 31, 106 |
| Conread position: | 759-1017 |
| Cow position: | chr19:17731850-17732099 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 223, 14 |
| Conread position: | 760-1026 |
| Cow position: | chr19:35171670-35171404 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 762-1011 |
| Cow position: | chr19:6446681-6446426 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 217 |
| Conread position: | 769-1026 |
| Cow position: | chr19:10116180-10116429 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 233, 78 |
| Conread position: | 775-980 |
| Cow position: | chr19:26805931-26805736 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 779-1017 |
| Cow position: | chr19:21211518-21211288 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 226, 88 |
| Conread position: | 788-968 |
| Cow position: | chr19:55673873-55674052 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 792-985 |
| Cow position: | chr19:44005577-44005769 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 52, 82 |
| Conread position: | 796-1029 |
| Cow position: | chr19:43510867-43511098 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.