Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047D10.3 |
| Conread position: | 5-222 |
| Cow position: | chr21:27149158-27148943 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 154, 9 |
| Conread position: | 5-222 |
| Cow position: | chr21:27610345-27610129 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 154, 9 |
| Conread position: | 7-184 |
| Cow position: | chr21:44254019-44254197 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 152, 46 |
| Conread position: | 9-265 |
| Cow position: | chr21:27068563-27068304 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 97, 79 |
| Conread position: | 18-220 |
| Cow position: | chr21:26401343-26401142 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 18-222 |
| Cow position: | chr21:31513910-31513706 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 18-223 |
| Cow position: | chr21:996019-995816 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 180, 127 |
| Conread position: | 18-265 |
| Cow position: | chr21:5019553-5019802 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 18-265 |
| Cow position: | chr21:21025883-21026138 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 24-265 |
| Cow position: | chr21:2879411-2879171 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 195, 131 |
| Conread position: | 24-274 |
| Cow position: | chr21:47647749-47648001 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 70 |
| Conread position: | 25-225 |
| Cow position: | chr21:45299680-45299484 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 98, 137 |
| Conread position: | 25-265 |
| Cow position: | chr21:30596675-30596432 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 81, 70 |
| Conread position: | 34-204 |
| Cow position: | chr21:32831798-32831626 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 34-209 |
| Cow position: | chr21:38242448-38242275 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 34-215 |
| Cow position: | chr21:11244694-11244877 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 34-222 |
| Cow position: | chr21:2418629-2418818 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 34-222 |
| Cow position: | chr21:2665716-2665526 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 34-222 |
| Cow position: | chr21:9894571-9894762 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 80, 134 |
| Conread position: | 34-222 |
| Cow position: | chr21:26700243-26700052 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-222 |
| Cow position: | chr21:36981072-36981258 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 125, 87 |
| Conread position: | 34-265 |
| Cow position: | chr21:47033782-47033549 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 123, 54 |
| Conread position: | 34-265 |
| Cow position: | chr21:48529995-48529765 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 185, 127 |
| Conread position: | 34-308 |
| Cow position: | chr21:37123933-37123657 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 125, 265 |
| Conread position: | 34-331 |
| Cow position: | chr21:46969257-46968956 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 47 |
| Conread position: | 35-217 |
| Cow position: | chr21:26634733-26634550 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 124, 39 |
| Conread position: | 35-222 |
| Cow position: | chr21:16830817-16830998 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 124, 61 |
| Conread position: | 35-222 |
| Cow position: | chr21:37373650-37373839 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 35-264 |
| Cow position: | chr21:36978479-36978252 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 134, 177 |
| Conread position: | 36-184 |
| Cow position: | chr21:19352350-19352500 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-209 |
| Cow position: | chr21:38019661-38019835 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 125, 22 |
| Conread position: | 36-217 |
| Cow position: | chr21:7038774-7038957 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 36-221 |
| Cow position: | chr21:44531623-44531811 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:4091762-4091946 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:6967035-6966854 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:7063245-7063057 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:11291114-11291301 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:27621072-27620885 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:29949538-29949352 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:32397626-32397438 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:36375413-36375601 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:39225631-39225443 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:39427501-39427689 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:41797298-41797110 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr21:47976261-47976449 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 36-225 |
| Cow position: | chr21:34551723-34551531 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 123, 82 |
| Conread position: | 36-586 |
| Cow position: | chr21:15248256-15247701 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 363 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 86, 54 |
| Conread position: | 38-222 |
| Cow position: | chr21:34656386-34656574 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 39-223 |
| Cow position: | chr21:30352375-30352560 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 120, 56 |
| Conread position: | 41-225 |
| Cow position: | chr21:4073531-4073715 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 167, 125 |
| Conread position: | 73-220 |
| Cow position: | chr21:7163519-7163370 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 115 |
| Conread position: | 88-267 |
| Cow position: | chr21:21917960-21918142 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 71, 121 |
| Conread position: | 106-584 |
| Cow position: | chr21:1993653-1994161 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 292-572 |
| Cow position: | chr21:49349245-49349529 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 90 |
| Conread position: | 303-585 |
| Cow position: | chr21:37085912-37086197 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 84, 25 |
| Conread position: | 304-586 |
| Cow position: | chr21:29433942-29434223 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 307-578 |
| Cow position: | chr21:15942858-15943125 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 65, 6 |
| Conread position: | 307-585 |
| Cow position: | chr21:43641853-43641576 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 6 |
| Conread position: | 307-586 |
| Cow position: | chr21:29726957-29727243 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 6 |
| Conread position: | 312-535 |
| Cow position: | chr21:42453701-42453936 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 312-573 |
| Cow position: | chr21:404813-404547 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 313-533 |
| Cow position: | chr21:9932838-9933061 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 61, 97 |
| Conread position: | 313-583 |
| Cow position: | chr21:432906-432638 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 187 |
| Conread position: | 319-550 |
| Cow position: | chr21:36651570-36651805 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 58, 9 |
| Conread position: | 328-573 |
| Cow position: | chr21:11328110-11327853 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 331-580 |
| Cow position: | chr21:23340882-23340623 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 161 |
| Conread position: | 331-580 |
| Cow position: | chr21:30056909-30056650 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 161 |
| Conread position: | 334-536 |
| Cow position: | chr21:4025336-4025127 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 127 |
| Conread position: | 575-1026 |
| Cow position: | chr21:24868642-24869120 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 65, 162 |
| Conread position: | 589-996 |
| Cow position: | chr21:9933439-9933850 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 256 |
| Conread position: | 652-989 |
| Cow position: | chr21:42113836-42113509 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 8, 14 |
| Conread position: | 687-1023 |
| Cow position: | chr21:11218149-11217833 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 158 |
| Conread position: | 690-1028 |
| Cow position: | chr21:21478803-21478470 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 698-997 |
| Cow position: | chr21:30649943-30649645 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 10, 6 |
| Conread position: | 698-1026 |
| Cow position: | chr21:45297706-45297381 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 67, 95 |
| Conread position: | 707-1003 |
| Cow position: | chr21:1078138-1078438 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 56, 231 |
| Conread position: | 760-1005 |
| Cow position: | chr21:22861686-22861925 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 231, 103 |
| Conread position: | 774-1012 |
| Cow position: | chr21:3599114-3598879 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 802-1004 |
| Cow position: | chr21:4407209-4407406 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 822-1004 |
| Cow position: | chr21:432118-431940 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 830-1004 |
| Cow position: | chr21:38804443-38804272 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.