Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047D10.3 |
| Conread position: | 5-265 |
| Cow position: | chr25:34344699-34344436 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 8-267 |
| Cow position: | chr25:4108090-4108367 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 225 |
| Conread position: | 9-220 |
| Cow position: | chr25:5265768-5265565 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 18-217 |
| Cow position: | chr25:33837438-33837639 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 18-222 |
| Cow position: | chr25:12699994-12700193 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-222 |
| Cow position: | chr25:20631911-20632114 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-222 |
| Cow position: | chr25:26281041-26281244 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 18-265 |
| Cow position: | chr25:18887456-18887203 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 18-265 |
| Cow position: | chr25:34505797-34505548 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 25-222 |
| Cow position: | chr25:11664696-11664893 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 133, 9 |
| Conread position: | 25-222 |
| Cow position: | chr25:13959103-13959298 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 26-223 |
| Cow position: | chr25:33208846-33208649 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 8 |
| Conread position: | 27-223 |
| Cow position: | chr25:21276180-21276375 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 7 |
| Conread position: | 34-209 |
| Cow position: | chr25:12940139-12939965 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 34-209 |
| Cow position: | chr25:28861910-28862084 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 69, 56 |
| Conread position: | 34-221 |
| Cow position: | chr25:38398487-38398675 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 34-222 |
| Cow position: | chr25:23774167-23773976 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 89 |
| Conread position: | 34-225 |
| Cow position: | chr25:21966279-21966469 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 34-265 |
| Cow position: | chr25:24656401-24656167 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 34-277 |
| Cow position: | chr25:30313168-30312921 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 34, 14 |
| Conread position: | 35-222 |
| Cow position: | chr25:34510710-34510525 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 35-222 |
| Cow position: | chr25:34667690-34667502 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 35-234 |
| Cow position: | chr25:18426329-18426526 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 124, 84 |
| Conread position: | 35-267 |
| Cow position: | chr25:11658437-11658672 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 75, 99 |
| Conread position: | 36-222 |
| Cow position: | chr25:13352003-13352191 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr25:18191351-18191166 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 36-222 |
| Cow position: | chr25:29359066-29359251 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 36-222 |
| Cow position: | chr25:29803742-29803557 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 36-222 |
| Cow position: | chr25:35552724-35552912 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-253 |
| Cow position: | chr25:14537627-14537413 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 123, 19 |
| Conread position: | 39-267 |
| Cow position: | chr25:32448189-32448420 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 28, 55 |
| Conread position: | 40-225 |
| Cow position: | chr25:20099678-20099865 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 58-271 |
| Cow position: | chr25:30637666-30637455 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 102, 25 |
| Conread position: | 72-222 |
| Cow position: | chr25:38597232-38597384 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 292-552 |
| Cow position: | chr25:21232150-21232421 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 292-552 |
| Cow position: | chr25:21241518-21241789 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 292-585 |
| Cow position: | chr25:21276536-21276841 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 13, 187 |
| Conread position: | 296-586 |
| Cow position: | chr25:35931670-35931368 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 186 |
| Conread position: | 298-575 |
| Cow position: | chr25:22124339-22124061 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 301-588 |
| Cow position: | chr25:1026070-1025778 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 72, 5 |
| Conread position: | 307-586 |
| Cow position: | chr25:27813872-27814160 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 80, 6 |
| Conread position: | 308-536 |
| Cow position: | chr25:38913821-38913594 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 79, 109 |
| Conread position: | 308-582 |
| Cow position: | chr25:22377274-22376998 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 77, 150 |
| Conread position: | 311-586 |
| Cow position: | chr25:12172420-12172140 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 74, 140 |
| Conread position: | 331-586 |
| Cow position: | chr25:17555063-17554801 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 122 |
| Conread position: | 336-574 |
| Cow position: | chr25:34675708-34675956 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 687-1004 |
| Cow position: | chr25:25239279-25238965 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 688-1029 |
| Cow position: | chr25:25731372-25731714 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 101, 81 |
| Conread position: | 693-994 |
| Cow position: | chr25:30112680-30112384 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 20, 178 |
| Conread position: | 698-985 |
| Cow position: | chr25:14011683-14011973 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 699-1004 |
| Cow position: | chr25:36516652-36516354 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 244, 133 |
| Conread position: | 706-1026 |
| Cow position: | chr25:32449083-32449404 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 78 |
| Conread position: | 707-998 |
| Cow position: | chr25:17339368-17339082 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 62, 131 |
| Conread position: | 716-977 |
| Cow position: | chr25:34663756-34663503 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 30, 8 |
| Conread position: | 794-997 |
| Cow position: | chr25:27977888-27977686 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 115, 79 |
| Conread position: | 802-981 |
| Cow position: | chr25:11941564-11941387 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 165, 81 |
Show alignments to all cow chromosomes.