Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047D10.3 |
| Conread position: | 5-222 |
| Cow position: | chr28:34582185-34582401 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 154, 9 |
| Conread position: | 5-265 |
| Cow position: | chr28:1215569-1215309 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 101, 90 |
| Conread position: | 14-274 |
| Cow position: | chr28:2086740-2086995 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 218, 141 |
| Conread position: | 18-222 |
| Cow position: | chr28:784944-785147 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 85, 54 |
| Conread position: | 18-222 |
| Cow position: | chr28:12407938-12407736 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 18-265 |
| Cow position: | chr28:1165612-1165362 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 18-265 |
| Cow position: | chr28:3189968-3189719 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 85, 23 |
| Conread position: | 18-265 |
| Cow position: | chr28:5210396-5210643 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-265 |
| Cow position: | chr28:10579585-10579335 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 18-265 |
| Cow position: | chr28:17390686-17390936 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-265 |
| Cow position: | chr28:34596518-34596768 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 85, 67 |
| Conread position: | 22-265 |
| Cow position: | chr28:7743420-7743663 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 84, 73 |
| Conread position: | 25-265 |
| Cow position: | chr28:5112437-5112197 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 69 |
| Conread position: | 34-220 |
| Cow position: | chr28:25041144-25040962 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 34-222 |
| Cow position: | chr28:8718675-8718494 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 34-222 |
| Cow position: | chr28:9317044-9316861 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 34-222 |
| Cow position: | chr28:21378827-21379014 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 34-222 |
| Cow position: | chr28:21568195-21568386 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 34-222 |
| Cow position: | chr28:24669889-24670078 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 125, 59 |
| Conread position: | 34-222 |
| Cow position: | chr28:26423971-26423784 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 34-222 |
| Cow position: | chr28:30097165-30097355 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-222 |
| Cow position: | chr28:30534774-30534584 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 34-222 |
| Cow position: | chr28:34084225-34084041 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 125, 51 |
| Conread position: | 34-225 |
| Cow position: | chr28:918280-918084 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 34-225 |
| Cow position: | chr28:933973-933777 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 34-225 |
| Cow position: | chr28:27957437-27957242 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 34-235 |
| Cow position: | chr28:28441050-28441244 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 34-241 |
| Cow position: | chr28:20633776-20633570 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 183, 71 |
| Conread position: | 34-265 |
| Cow position: | chr28:8381336-8381570 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-270 |
| Cow position: | chr28:29841339-29841118 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 197, 66 |
| Conread position: | 35-215 |
| Cow position: | chr28:957180-957363 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 33, 43 |
| Conread position: | 35-222 |
| Cow position: | chr28:16596622-16596806 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 35-222 |
| Cow position: | chr28:22231036-22230851 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 86 |
| Conread position: | 35-265 |
| Cow position: | chr28:29037357-29037123 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 203 |
| Conread position: | 36-222 |
| Cow position: | chr28:1955661-1955849 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 31, 39 |
| Conread position: | 36-222 |
| Cow position: | chr28:2644008-2644196 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 36-222 |
| Cow position: | chr28:5338404-5338219 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 36-222 |
| Cow position: | chr28:7335282-7335470 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr28:10302135-10302319 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 36-222 |
| Cow position: | chr28:15918231-15918044 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 36-222 |
| Cow position: | chr28:21894244-21894429 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 121, 50 |
| Conread position: | 36-222 |
| Cow position: | chr28:24591163-24591351 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 36-222 |
| Cow position: | chr28:24885150-24885338 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr28:25849341-25849153 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr28:28928125-28928310 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 36-222 |
| Cow position: | chr28:32588739-32588551 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 37-221 |
| Cow position: | chr28:9181166-9181352 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 38-207 |
| Cow position: | chr28:10598973-10599144 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 39-222 |
| Cow position: | chr28:7828794-7828975 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 87-274 |
| Cow position: | chr28:33265728-33265910 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 291-580 |
| Cow position: | chr28:28470646-28470944 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 46 |
| Conread position: | 291-586 |
| Cow position: | chr28:8787720-8788013 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 94, 44 |
| Conread position: | 292-579 |
| Cow position: | chr28:8966404-8966107 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 33, 112 |
| Conread position: | 303-586 |
| Cow position: | chr28:27241001-27240718 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 84, 69 |
| Conread position: | 307-863 |
| Cow position: | chr28:3308479-3309059 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 384 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 109, 6 |
| Conread position: | 313-529 |
| Cow position: | chr28:9107114-9107343 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 50, 192 |
| Conread position: | 313-558 |
| Cow position: | chr28:17746094-17745847 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 77, 134 |
| Conread position: | 317-584 |
| Cow position: | chr28:785316-785592 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 317-673 |
| Cow position: | chr28:7743792-7744154 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 319-572 |
| Cow position: | chr28:28548907-28549162 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 319-582 |
| Cow position: | chr28:22841862-22842127 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 331-580 |
| Cow position: | chr28:15604277-15604532 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 333-579 |
| Cow position: | chr28:3004848-3004601 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 182 |
| Conread position: | 349-585 |
| Cow position: | chr28:18178495-18178253 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 604-1003 |
| Cow position: | chr28:26051632-26051225 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 52 |
| Conread position: | 651-910 |
| Cow position: | chr28:24542127-24542396 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 204 |
| Conread position: | 684-995 |
| Cow position: | chr28:22842616-22842914 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 687-1029 |
| Cow position: | chr28:23916166-23916512 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 693-1002 |
| Cow position: | chr28:20629989-20629690 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 699-938 |
| Cow position: | chr28:9107639-9107875 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 148, 58 |
| Conread position: | 739-985 |
| Cow position: | chr28:32635755-32635509 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 749-1019 |
| Cow position: | chr28:24734688-24734958 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 14, 125 |
| Conread position: | 759-978 |
| Cow position: | chr28:31431486-31431703 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 40, 94 |
| Conread position: | 791-1004 |
| Cow position: | chr28:9862181-9861972 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 64 |
| Conread position: | 795-997 |
| Cow position: | chr28:14929068-14929272 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 7 |
Show alignments to all cow chromosomes.