Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047D10.3 |
| Conread position: | 5-221 |
| Cow position: | chr9:9327918-9327701 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 154, 30 |
| Conread position: | 8-222 |
| Cow position: | chr9:40416907-40416695 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 8-265 |
| Cow position: | chr9:59480729-59480469 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 98, 87 |
| Conread position: | 9-265 |
| Cow position: | chr9:30674191-30674450 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 94, 85 |
| Conread position: | 18-222 |
| Cow position: | chr9:9015204-9015410 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-222 |
| Cow position: | chr9:19157150-19156945 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 18-265 |
| Cow position: | chr9:17303834-17303587 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 88, 77 |
| Conread position: | 18-265 |
| Cow position: | chr9:31809715-31809962 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 18-265 |
| Cow position: | chr9:42311825-42312072 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 24-222 |
| Cow position: | chr9:21411447-21411645 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 11, 5 |
| Conread position: | 25-222 |
| Cow position: | chr9:7059926-7059727 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 81, 70 |
| Conread position: | 25-222 |
| Cow position: | chr9:48796155-48795957 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 134, 11 |
| Conread position: | 34-158 |
| Cow position: | chr9:44461483-44461360 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 34-221 |
| Cow position: | chr9:18834179-18833995 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 123, 24 |
| Conread position: | 34-221 |
| Cow position: | chr9:25819224-25819037 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 134, 154 |
| Conread position: | 34-221 |
| Cow position: | chr9:35681556-35681744 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 34-221 |
| Cow position: | chr9:35707722-35707910 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 34-222 |
| Cow position: | chr9:2630748-2630937 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-222 |
| Cow position: | chr9:3577337-3577147 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 34-222 |
| Cow position: | chr9:5535070-5534882 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 68, 60 |
| Conread position: | 34-222 |
| Cow position: | chr9:14535181-14535369 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 130 |
| Conread position: | 34-222 |
| Cow position: | chr9:27037257-27037446 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-222 |
| Cow position: | chr9:28356712-28356901 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 34-222 |
| Cow position: | chr9:33593284-33593474 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 34-222 |
| Cow position: | chr9:34770314-34770492 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 34-222 |
| Cow position: | chr9:51180026-51179836 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 72, 61 |
| Conread position: | 34-224 |
| Cow position: | chr9:60324836-60324644 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 34-265 |
| Cow position: | chr9:5626962-5627196 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-265 |
| Cow position: | chr9:10938872-10939103 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-265 |
| Cow position: | chr9:18507678-18507447 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 199, 129 |
| Conread position: | 34-265 |
| Cow position: | chr9:28023956-28024189 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 34-265 |
| Cow position: | chr9:47004887-47005121 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 35-221 |
| Cow position: | chr9:5573848-5573666 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 35-222 |
| Cow position: | chr9:129044-128855 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 35-222 |
| Cow position: | chr9:6884478-6884665 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 35-265 |
| Cow position: | chr9:31091332-31091564 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 36-218 |
| Cow position: | chr9:61238792-61238608 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:4941342-4941154 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:6708908-6708720 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:25212023-25212210 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 57 |
| Conread position: | 36-222 |
| Cow position: | chr9:28680123-28680311 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:34240951-34240764 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 123, 99 |
| Conread position: | 36-222 |
| Cow position: | chr9:37174952-37175140 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:44203921-44203733 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:45875667-45875855 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:47044118-47044306 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:50325993-50326180 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 36-222 |
| Cow position: | chr9:52525305-52525493 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:56302292-56302104 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 36-222 |
| Cow position: | chr9:64013073-64012885 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 38-222 |
| Cow position: | chr9:2680724-2680910 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 40-221 |
| Cow position: | chr9:12726601-12726784 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 42-222 |
| Cow position: | chr9:2213301-2213481 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 103, 113 |
| Conread position: | 48-222 |
| Cow position: | chr9:17900407-17900231 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 292-543 |
| Cow position: | chr9:11339039-11338776 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 292-580 |
| Cow position: | chr9:44168069-44168369 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 292-584 |
| Cow position: | chr9:52913921-52913614 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 308-473 |
| Cow position: | chr9:8980382-8980213 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 308-514 |
| Cow position: | chr9:35157755-35157540 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 71, 190 |
| Conread position: | 308-580 |
| Cow position: | chr9:45876017-45876299 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 308-583 |
| Cow position: | chr9:46626810-46627096 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 313-551 |
| Cow position: | chr9:5573497-5573252 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 61, 137 |
| Conread position: | 323-573 |
| Cow position: | chr9:24723287-24723544 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 62, 226 |
| Conread position: | 331-583 |
| Cow position: | chr9:5534412-5534150 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 338-579 |
| Cow position: | chr9:56444083-56443836 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 82 |
| Conread position: | 591-1023 |
| Cow position: | chr9:27782066-27781631 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 295 |
| Conread position: | 641-997 |
| Cow position: | chr9:56265372-56264992 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 9, 352 |
| Conread position: | 679-911 |
| Cow position: | chr9:34250308-34250538 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 688-997 |
| Cow position: | chr9:29022758-29023059 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 688-997 |
| Cow position: | chr9:31276556-31276867 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 19, 103 |
| Conread position: | 689-1000 |
| Cow position: | chr9:16159450-16159760 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 696-978 |
| Cow position: | chr9:56767719-56767437 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 179 |
| Conread position: | 696-1026 |
| Cow position: | chr9:50062981-50062652 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 176, 0 |
| Conread position: | 696-1026 |
| Cow position: | chr9:56561706-56562033 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 698-1030 |
| Cow position: | chr9:7059093-7058759 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 65, 174 |
| Conread position: | 711-999 |
| Cow position: | chr9:24723733-24724013 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 54, 38 |
| Conread position: | 726-1030 |
| Cow position: | chr9:6358883-6358577 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 758-996 |
| Cow position: | chr9:6394954-6395191 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 759-1004 |
| Cow position: | chr9:12990990-12991235 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 203, 13 |
Show alignments to all cow chromosomes.