Cow genome map

Conread name: Ss1.1-Pig4-TMW8047D10.3

Conread position: 4-221
Cow position: chrX:10706749-10706966 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 147
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 98, 89

Conread position: 4-265
Cow position: chrX:20724998-20725261 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 99, 10

Conread position: 5-222
Cow position: chrX:16701712-16701928 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 101, 9

Conread position: 5-222
Cow position: chrX:29095287-29095071 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 154, 9

Conread position: 5-223
Cow position: chrX:20357972-20357755 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 154, 9

Conread position: 8-221
Cow position: chrX:20512528-20512315 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 163, 15

Conread position: 9-222
Cow position: chrX:20588726-20588935 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 144
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 120, 0

Conread position: 9-222
Cow position: chrX:23394638-23394852 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 94, 12

Conread position: 9-265
Cow position: chrX:23454022-23453764 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 62

Conread position: 9-265
Cow position: chrX:30181895-30181637 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 173
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 159, 46

Conread position: 10-222
Cow position: chrX:7095532-7095743 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 148, 0

Conread position: 10-222
Cow position: chrX:21225510-21225724 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 149
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 84

Conread position: 10-265
Cow position: chrX:21831544-21831803 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 168
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 18-222
Cow position: chrX:17890586-17890790 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 43

Conread position: 18-225
Cow position: chrX:26756602-26756393 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 148
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 88, 77

Conread position: 18-264
Cow position: chrX:27388246-27387997 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 141, 40

Conread position: 18-265
Cow position: chrX:1549021-1549269 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 163
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 216, 145

Conread position: 18-265
Cow position: chrX:12464045-12464296 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 167
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 76

Conread position: 18-265
Cow position: chrX:23279068-23279315 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 162
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 85, 76

Conread position: 18-274
Cow position: chrX:13407241-13406987 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 175
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 88, 77

Conread position: 18-412
Cow position: chrX:23848853-23849268 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 284
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 140, 164

Conread position: 25-184
Cow position: chrX:26278883-26278723 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 79, 53

Conread position: 25-214
Cow position: chrX:13653351-13653543 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 134, 86

Conread position: 25-221
Cow position: chrX:16539314-16539511 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 149, 104

Conread position: 25-221
Cow position: chrX:23959024-23959220 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 151, 21

Conread position: 25-222
Cow position: chrX:2814431-2814233 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 134, 11

Conread position: 25-222
Cow position: chrX:24446162-24445964 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 138
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 134, 11

Conread position: 25-222
Cow position: chrX:30168026-30167831 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 25-222
Cow position: chrX:39712601-39712797 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 136, 89

Conread position: 25-265
Cow position: chrX:7552761-7552518 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 160
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 69

Conread position: 26-211
Cow position: chrX:24996951-24996766 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 127, 7

Conread position: 26-265
Cow position: chrX:9094695-9094934 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 193, 137

Conread position: 29-265
Cow position: chrX:23388498-23388259 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 77, 66

Conread position: 30-222
Cow position: chrX:5853073-5852878 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 77, 65

Conread position: 33-221
Cow position: chrX:18899752-18899564 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 25

Conread position: 34-174
Cow position: chrX:24807492-24807352 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 34-209
Cow position: chrX:43791099-43790922 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 72, 57

Conread position: 34-210
Cow position: chrX:13087548-13087374 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 39

Conread position: 34-220
Cow position: chrX:514571-514758 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 72, 61

Conread position: 34-220
Cow position: chrX:731501-731313 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 125, 0

Conread position: 34-220
Cow position: chrX:22818132-22818318 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 80

Conread position: 34-221
Cow position: chrX:22809952-22810138 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 69, 60

Conread position: 34-221
Cow position: chrX:24887247-24887058 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 34-221
Cow position: chrX:26342124-26341941 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 132, 36

Conread position: 34-222
Cow position: chrX:503979-503789 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 134, 0

Conread position: 34-222
Cow position: chrX:16022820-16023009 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 125, 34

Conread position: 34-222
Cow position: chrX:23021371-23021561 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 69, 60

Conread position: 34-222
Cow position: chrX:24200064-24200249 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 134
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 122, 105

Conread position: 34-222
Cow position: chrX:26623752-26623565 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 34-222
Cow position: chrX:27978760-27978573 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 129, 0

Conread position: 34-222
Cow position: chrX:30230053-30229867 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 72, 59

Conread position: 34-265
Cow position: chrX:2480572-2480340 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 164
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 69, 60

Conread position: 34-265
Cow position: chrX:21751604-21751370 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 155
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 73, 61

Conread position: 34-265
Cow position: chrX:31200618-31200847 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 153
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 185, 129

Conread position: 34-265
Cow position: chrX:38149652-38149887 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 158
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 134, 196

Conread position: 34-273
Cow position: chrX:38124454-38124689 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 125, 61

Conread position: 35-220
Cow position: chrX:36536671-36536488 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 79, 90

Conread position: 35-221
Cow position: chrX:31979791-31979607 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 126, 0

Conread position: 35-222
Cow position: chrX:12344996-12345182 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 128, 0

Conread position: 35-222
Cow position: chrX:18919711-18919893 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 35-222
Cow position: chrX:20741572-20741383 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 124, 0

Conread position: 35-222
Cow position: chrX:24730705-24730894 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 124, 0

Conread position: 35-222
Cow position: chrX:27304007-27304187 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 130
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 126, 0

Conread position: 35-222
Cow position: chrX:28520541-28520355 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 167, 0

Conread position: 35-222
Cow position: chrX:37814205-37814394 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 124, 0

Conread position: 35-226
Cow position: chrX:22126710-22126520 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 130
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 110, 0

Conread position: 35-260
Cow position: chrX:30059239-30059464 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 150
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 68, 59

Conread position: 36-220
Cow position: chrX:11462937-11462751 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 131, 0

Conread position: 36-221
Cow position: chrX:15622434-15622247 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 36-221
Cow position: chrX:21492224-21492411 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:2578482-2578670 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 118, 0

Conread position: 36-222
Cow position: chrX:3359887-3360074 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 123, 93

Conread position: 36-222
Cow position: chrX:3373862-3373674 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:3419161-3418974 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 131, 62

Conread position: 36-222
Cow position: chrX:5281723-5281535 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:5321656-5321468 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:5333372-5333184 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:6580000-6580188 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:7119548-7119736 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:7753962-7754150 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:8481511-8481699 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:9010396-9010580 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 36-222
Cow position: chrX:9127141-9127329 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 128
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 125, 0

Conread position: 36-222
Cow position: chrX:12652432-12652247 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 130
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 122, 0

Conread position: 36-222
Cow position: chrX:13072389-13072202 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 121, 152

Conread position: 36-222
Cow position: chrX:13092949-13092762 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 121, 152

Conread position: 36-222
Cow position: chrX:13929674-13929486 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:14596915-14597100 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 127, 0

Conread position: 36-222
Cow position: chrX:16045034-16045215 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 36-222
Cow position: chrX:16361047-16360863 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 125, 0

Conread position: 36-222
Cow position: chrX:16464254-16464441 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 126, 0

Conread position: 36-222
Cow position: chrX:16805083-16804895 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 131, 0

Conread position: 36-222
Cow position: chrX:16809828-16809640 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 131, 0

Conread position: 36-222
Cow position: chrX:17476350-17476162 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:18657745-18657557 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:21766688-21766876 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 132, 0

Conread position: 36-222
Cow position: chrX:22565629-22565441 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:27424227-27424039 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 121, 0

Conread position: 36-222
Cow position: chrX:28505204-28505016 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:28587038-28587225 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 87

Conread position: 36-222
Cow position: chrX:30436963-30437151 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:31494791-31494980 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 36-222
Cow position: chrX:32065106-32064918 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 131, 0

Conread position: 36-222
Cow position: chrX:34093771-34093583 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 123, 0

Conread position: 36-222
Cow position: chrX:35531918-35532103 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 136
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 127, 0

Conread position: 36-225
Cow position: chrX:28559815-28559624 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 36-265
Cow position: chrX:3142894-3143126 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 24, 61

Conread position: 38-222
Cow position: chrX:2047153-2047335 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 38-234
Cow position: chrX:21657646-21657842 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 119, 28

Conread position: 38-288
Cow position: chrX:11859878-11859628 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 121, 85

Conread position: 39-221
Cow position: chrX:14268823-14268639 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 56

Conread position: 39-222
Cow position: chrX:6871021-6870836 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 127
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 120, 0

Conread position: 44-222
Cow position: chrX:5865206-5865385 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 116, 156

Conread position: 73-267
Cow position: chrX:22076834-22076639 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 86, 39

Conread position: 74-226
Cow position: chrX:24729094-24729244 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 79-274
Cow position: chrX:23384449-23384251 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 143
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 80, 128

Conread position: 87-223
Cow position: chrX:24526820-24526958 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 89, 0

Conread position: 244-585
Cow position: chrX:5933074-5933428 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 245
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 24, 9

Conread position: 286-585
Cow position: chrX:23925664-23925356 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 222
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 60

Conread position: 288-468
Cow position: chrX:31610401-31610586 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 97, 24

Conread position: 288-533
Cow position: chrX:25968076-25968323 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 173
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 45, 101

Conread position: 291-551
Cow position: chrX:11078462-11078204 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 174
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 195, 81

Conread position: 292-543
Cow position: chrX:21729717-21729458 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 191
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 169

Conread position: 292-558
Cow position: chrX:10823741-10823465 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 0

Conread position: 292-584
Cow position: chrX:24764989-24764684 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 13, 93

Conread position: 292-585
Cow position: chrX:23586039-23586341 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 221
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 83, 18

Conread position: 292-616
Cow position: chrX:24527651-24527983 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 85, 67

Conread position: 293-597
Cow position: chrX:10994177-10994498 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 12, 259

Conread position: 296-480
Cow position: chrX:25070144-25069950 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 9, 39

Conread position: 297-580
Cow position: chrX:7754298-7754593 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 194
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 8, 265

Conread position: 297-580
Cow position: chrX:9086106-9086397 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 192
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 42

Conread position: 297-586
Cow position: chrX:18899428-18899129 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 197
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 39

Conread position: 307-534
Cow position: chrX:25175516-25175751 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 165
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 71, 6

Conread position: 307-569
Cow position: chrX:18920050-18920320 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 176
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 307-585
Cow position: chrX:164323-164599 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 80, 6

Conread position: 307-585
Cow position: chrX:11113737-11113453 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 72, 26

Conread position: 308-535
Cow position: chrX:37945110-37944879 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 68, 0

Conread position: 308-535
Cow position: chrX:37950837-37951067 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 72, 0

Conread position: 308-579
Cow position: chrX:4157661-4157382 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 203
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 79, 0

Conread position: 308-584
Cow position: chrX:19590751-19590467 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 79, 252

Conread position: 308-586
Cow position: chrX:20870812-20870521 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 70, 52

Conread position: 308-586
Cow position: chrX:23327393-23327110 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 192
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 77, 156

Conread position: 308-595
Cow position: chrX:17488229-17487938 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 200
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 65, 49

Conread position: 313-577
Cow position: chrX:514925-515182 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 175
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 64, 104

Conread position: 319-514
Cow position: chrX:31451703-31451908 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 10, 17

Conread position: 319-522
Cow position: chrX:26634321-26634108 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 130

Conread position: 319-586
Cow position: chrX:30540056-30539784 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 67, 0

Conread position: 331-580
Cow position: chrX:2117961-2117702 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 175
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 47, 161

Conread position: 343-586
Cow position: chrX:2879276-2879027 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 167
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 145

Conread position: 591-953
Cow position: chrX:6194679-6194302 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 248
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 49, 94

Conread position: 592-988
Cow position: chrX:3951618-3952016 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 254
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 48, 21

Conread position: 608-964
Cow position: chrX:21264418-21264067 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 249
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 42, 14

Conread position: 654-1003
Cow position: chrX:19171679-19171337 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 247
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 17, 59

Conread position: 687-1000
Cow position: chrX:1047438-1047740 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 211
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 81, 67

Conread position: 688-916
Cow position: chrX:27386281-27386044 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 16

Conread position: 688-957
Cow position: chrX:41860364-41860628 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 72, 160

Conread position: 688-994
Cow position: chrX:24528170-24528476 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 200
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 128

Conread position: 688-1004
Cow position: chrX:7308554-7308864 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 203
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 45

Conread position: 688-1026
Cow position: chrX:20758388-20758055 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 225
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 112, 100

Conread position: 688-1029
Cow position: chrX:31503255-31503585 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 222
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 15

Conread position: 696-908
Cow position: chrX:18289221-18289014 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 67, 15

Conread position: 696-925
Cow position: chrX:39765425-39765650 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 153
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 21

Conread position: 696-966
Cow position: chrX:13654357-13654628 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 69, 178

Conread position: 696-982
Cow position: chrX:26341340-26341061 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 192
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 21, 94

Conread position: 696-998
Cow position: chrX:20870357-20870058 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 204
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 16, 8

Conread position: 696-1004
Cow position: chrX:863029-862726 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 217
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 67, 49

Conread position: 696-1026
Cow position: chrX:25321383-25321055 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 225
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 21, 11

Conread position: 696-1028
Cow position: chrX:37753286-37753608 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 221
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 16, 7

Conread position: 698-977
Cow position: chrX:17523361-17523083 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 65, 19

Conread position: 699-997
Cow position: chrX:23326937-23326639 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 202
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 9, 5

Conread position: 699-997
Cow position: chrX:37416717-37416428 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 194
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 5

Conread position: 716-993
Cow position: chrX:11082374-11082102 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 183
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 183, 63

Conread position: 730-929
Cow position: chrX:19590272-19590073 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 142
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 35, 118

Conread position: 733-997
Cow position: chrX:39566290-39566032 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 28, 65

Conread position: 739-1022
Cow position: chrX:25144016-25144293 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 195
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 46

Conread position: 749-1029
Cow position: chrX:27646115-27646388 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 184
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 15, 63

Conread position: 759-947
Cow position: chrX:23586743-23586930 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 165, 38

Conread position: 759-994
Cow position: chrX:3246228-3245999 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 164
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 40

Conread position: 760-1027
Cow position: chrX:4571508-4571244 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 178
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 112, 0

Conread position: 761-1020
Cow position: chrX:24225687-24225429 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 110

Conread position: 762-1004
Cow position: chrX:8421201-8421434 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 167
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 786-992
Cow position: chrX:44428787-44428583 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 141
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 789-1004
Cow position: chrX:27117280-27117065 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 158, 84

Conread position: 792-1003
Cow position: chrX:1429995-1430199 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 150
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 71, 0

Conread position: 797-974
Cow position: chrX:26624759-26624591 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 806-1021
Cow position: chrX:10410114-10409901 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 137, 67

Conread position: 811-1026
Cow position: chrX:21729175-21728963 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 95, 62

Show alignments to all cow chromosomes.