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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8047J22.3
        

               
Conread position:
               
94-329
               

               
Cow position:
               
chr11:25783676-25783912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
193, 23
               

               
Conread position:
               
98-445
               

               
Cow position:
               
chr11:10562977-10563317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
94, 12
               

               
Conread position:
               
101-329
               

               
Cow position:
               
chr11:46884343-46884570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
106-323
               

               
Cow position:
               
chr11:45350536-45350320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
195, 11
               

               
Conread position:
               
108-300
               

               
Cow position:
               
chr11:8684102-8683912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
108-331
               

               
Cow position:
               
chr11:55744445-55744668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
193, 9
               

               
Conread position:
               
109-290
               

               
Cow position:
               
chr11:59902869-59903048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
109-298
               

               
Cow position:
               
chr11:78544262-78544449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
109-300
               

               
Cow position:
               
chr11:4674467-4674278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
109-313
               

               
Cow position:
               
chr11:19247220-19247025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-315
               

               
Cow position:
               
chr11:22676094-22676294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-318
               

               
Cow position:
               
chr11:7559978-7560187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr11:7458303-7458090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
129, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr11:10095322-10095534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr11:34968635-34968423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr11:37804575-37804362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr11:38236230-38236435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-324
               

               
Cow position:
               
chr11:36940617-36940403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
193, 8
               

               
Conread position:
               
109-328
               

               
Cow position:
               
chr11:3715216-3715433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
38, 8
               

               
Conread position:
               
109-328
               

               
Cow position:
               
chr11:30638971-30638757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-329
               

               
Cow position:
               
chr11:63975108-63975325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-331
               

               
Cow position:
               
chr11:21507981-21508208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
59, 8
               

               
Conread position:
               
109-331
               

               
Cow position:
               
chr11:35562698-35562920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
186, 8
               

               
Conread position:
               
109-332
               

               
Cow position:
               
chr11:5433247-5433465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
109-333
               

               
Cow position:
               
chr11:7874117-7874342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-333
               

               
Cow position:
               
chr11:77745273-77745046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
122, 8
               

               
Conread position:
               
109-334
               

               
Cow position:
               
chr11:55333888-55334121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
112, 8
               

               
Conread position:
               
109-336
               

               
Cow position:
               
chr11:13592714-13592943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
127, 8
               

               
Conread position:
               
109-337
               

               
Cow position:
               
chr11:32260513-32260736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
18, 8
               

               
Conread position:
               
109-350
               

               
Cow position:
               
chr11:35665584-35665340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
186, 8
               

               
Conread position:
               
110-321
               

               
Cow position:
               
chr11:32055201-32054997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
191, 14
               

               
Conread position:
               
110-328
               

               
Cow position:
               
chr11:42835969-42835757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
191, 14
               

               
Conread position:
               
110-332
               

               
Cow position:
               
chr11:42084696-42084473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
138, 7
               

               
Conread position:
               
110-339
               

               
Cow position:
               
chr11:49149027-49149252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 18
               

               
Conread position:
               
113-321
               

               
Cow position:
               
chr11:5416863-5417074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
113-323
               

               
Cow position:
               
chr11:40792725-40792504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 11
               

               
Conread position:
               
113-331
               

               
Cow position:
               
chr11:15772730-15772516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
188, 12
               

               
Conread position:
               
115-290
               

               
Cow position:
               
chr11:35139891-35140066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
32, 8
               

               
Conread position:
               
115-328
               

               
Cow position:
               
chr11:68326880-68326669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
186, 8
               

               
Conread position:
               
115-330
               

               
Cow position:
               
chr11:10876262-10876475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
115-331
               

               
Cow position:
               
chr11:37100185-37099975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
185, 9
               

               
Conread position:
               
116-261
               

               
Cow position:
               
chr11:76835640-76835496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
116-297
               

               
Cow position:
               
chr11:35926920-35926746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
116-307
               

               
Cow position:
               
chr11:19487496-19487305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
116-307
               

               
Cow position:
               
chr11:35109553-35109366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
49, 8
               

               
Conread position:
               
116-308
               

               
Cow position:
               
chr11:13043161-13042973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
116-312
               

               
Cow position:
               
chr11:68112277-68112080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
6, 116
               

               
Conread position:
               
116-316
               

               
Cow position:
               
chr11:6233895-6233695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-316
               

               
Cow position:
               
chr11:78381076-78380886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
183, 8
               

               
Conread position:
               
116-321
               

               
Cow position:
               
chr11:53778601-53778807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
112, 8
               

               
Conread position:
               
116-322
               

               
Cow position:
               
chr11:29659544-29659746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
107, 7
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr11:17517383-17517589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
120, 7
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr11:43914276-43914483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr11:49872900-49872698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
118, 7
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr11:70422609-70422405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 7
               

               
Conread position:
               
116-324
               

               
Cow position:
               
chr11:41986061-41985856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
186, 7
               

               
Conread position:
               
116-326
               

               
Cow position:
               
chr11:40459092-40459298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
94, 8
               

               
Conread position:
               
116-326
               

               
Cow position:
               
chr11:46922901-46922694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
96, 7
               

               
Conread position:
               
116-326
               

               
Cow position:
               
chr11:47639042-47638831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
91, 7
               

               
Conread position:
               
116-329
               

               
Cow position:
               
chr11:46329487-46329694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
116-330
               

               
Cow position:
               
chr11:56311611-56311403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-330
               

               
Cow position:
               
chr11:62230165-62230386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 8
               

               
Conread position:
               
116-331
               

               
Cow position:
               
chr11:39462608-39462817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
116-331
               

               
Cow position:
               
chr11:40395424-40395635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-331
               

               
Cow position:
               
chr11:45742362-45742568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
116-331
               

               
Cow position:
               
chr11:48315412-48315201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
185, 10
               

               
Conread position:
               
116-343
               

               
Cow position:
               
chr11:38334508-38334733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
185, 9
               

               
Conread position:
               
117-279
               

               
Cow position:
               
chr11:26633028-26632867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
117-314
               

               
Cow position:
               
chr11:20234670-20234867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
184, 7
               

               
Conread position:
               
117-316
               

               
Cow position:
               
chr11:20238662-20238859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
101, 9
               

               
Conread position:
               
117-316
               

               
Cow position:
               
chr11:68913126-68913326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
106, 7
               

               
Conread position:
               
117-316
               

               
Cow position:
               
chr11:86895362-86895555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
184, 7
               

               
Conread position:
               
117-325
               

               
Cow position:
               
chr11:45277163-45276957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 9
               

               
Conread position:
               
117-327
               

               
Cow position:
               
chr11:32782898-32782679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 9
               

               
Conread position:
               
117-327
               

               
Cow position:
               
chr11:77241690-77241895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
117-330
               

               
Cow position:
               
chr11:35347765-35347554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
184, 15
               

               
Conread position:
               
117-331
               

               
Cow position:
               
chr11:42016653-42016440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
203, 7
               

               
Conread position:
               
118-304
               

               
Cow position:
               
chr11:2835844-2836031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
5, 11
               

               
Conread position:
               
119-300
               

               
Cow position:
               
chr11:81406182-81406001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
52, 104
               

               
Conread position:
               
119-307
               

               
Cow position:
               
chr11:35981154-35980967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
182, 9
               

               
Conread position:
               
121-304
               

               
Cow position:
               
chr11:45872322-45872139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
181, 104
               

               
Conread position:
               
121-326
               

               
Cow position:
               
chr11:32881132-32881338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
121-337
               

               
Cow position:
               
chr11:20117062-20117281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 100
               

               
Conread position:
               
123-295
               

               
Cow position:
               
chr11:38670674-38670851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
73, 6
               

               
Conread position:
               
123-300
               

               
Cow position:
               
chr11:63435512-63435688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
123-304
               

               
Cow position:
               
chr11:27760508-27760689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
178, 159
               

               
Conread position:
               
123-304
               

               
Cow position:
               
chr11:35149389-35149573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
109, 74
               

               
Conread position:
               
123-307
               

               
Cow position:
               
chr11:30209829-30209649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
177, 29
               

               
Conread position:
               
123-316
               

               
Cow position:
               
chr11:1932501-1932305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
52, 111
               

               
Conread position:
               
123-316
               

               
Cow position:
               
chr11:63165656-63165468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
178, 117
               

               
Conread position:
               
123-320
               

               
Cow position:
               
chr11:73573636-73573834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
123-321
               

               
Cow position:
               
chr11:21421946-21421750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
158, 57
               

               
Conread position:
               
123-323
               

               
Cow position:
               
chr11:48672703-48672904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
123-323
               

               
Cow position:
               
chr11:70304060-70304266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
123-328
               

               
Cow position:
               
chr11:35723959-35724165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
123-329
               

               
Cow position:
               
chr11:80564284-80564493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
114, 90
               

               
Conread position:
               
123-330
               

               
Cow position:
               
chr11:31227953-31228149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
123-330
               

               
Cow position:
               
chr11:53773672-53773880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
123-331
               

               
Cow position:
               
chr11:13500006-13500210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
161, 102
               

               
Conread position:
               
123-331
               

               
Cow position:
               
chr11:19579025-19578824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
178, 82
               

               
Conread position:
               
123-331
               

               
Cow position:
               
chr11:84385648-84385435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
178, 163
               

               
Conread position:
               
123-336
               

               
Cow position:
               
chr11:70483861-70483649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
178, 102
               

               
Conread position:
               
124-279
               

               
Cow position:
               
chr11:71868611-71868458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
124-292
               

               
Cow position:
               
chr11:63849268-63849100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
124-300
               

               
Cow position:
               
chr11:60486427-60486250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
112, 160
               

               
Conread position:
               
124-301
               

               
Cow position:
               
chr11:62889902-62889725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
124-304
               

               
Cow position:
               
chr11:6297088-6296907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
124-312
               

               
Cow position:
               
chr11:80413021-80412830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
124-315
               

               
Cow position:
               
chr11:21830218-21830029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
177, 97
               

               
Conread position:
               
124-317
               

               
Cow position:
               
chr11:6395747-6395937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
124-322
               

               
Cow position:
               
chr11:32710506-32710705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
124-322
               

               
Cow position:
               
chr11:69417395-69417592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
177, 20
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr11:33001956-33002157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr11:35923846-35924046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr11:64781078-64781278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr11:74427669-74427869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
154, 148
               

               
Conread position:
               
124-326
               

               
Cow position:
               
chr11:4436311-4436527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
56, 172
               

               
Conread position:
               
124-326
               

               
Cow position:
               
chr11:26144104-26143904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
177, 157
               

               
Conread position:
               
124-328
               

               
Cow position:
               
chr11:46747869-46747664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
184, 180
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr11:1980276-1980069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr11:36520866-36521077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
42, 111
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr11:58048323-58048528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
177, 100
               

               
Conread position:
               
124-330
               

               
Cow position:
               
chr11:27913276-27913484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
149, 119
               

               
Conread position:
               
124-330
               

               
Cow position:
               
chr11:42884794-42884588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
177, 42
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr11:6094411-6094206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
177, 97
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr11:6857720-6857929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
100, 199
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr11:16314864-16315073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr11:19592003-19591799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
175, 162
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr11:49396534-49396326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
176, 129
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr11:87172085-87171878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
177, 129
               

               
Conread position:
               
124-332
               

               
Cow position:
               
chr11:35669960-35669767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
177, 66
               

               
Conread position:
               
124-333
               

               
Cow position:
               
chr11:29308572-29308782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
171, 0
               

               
Conread position:
               
124-333
               

               
Cow position:
               
chr11:30165501-30165712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
124-333
               

               
Cow position:
               
chr11:53510508-53510295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
157, 30
               

               
Conread position:
               
124-333
               

               
Cow position:
               
chr11:76890037-76890242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
190, 162
               

               
Conread position:
               
124-334
               

               
Cow position:
               
chr11:14378431-14378643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
10, 184
               

               
Conread position:
               
124-334
               

               
Cow position:
               
chr11:25603939-25604157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
124-337
               

               
Cow position:
               
chr11:15366981-15366771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
177, 116
               

               
Conread position:
               
124-338
               

               
Cow position:
               
chr11:2788385-2788600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
124-339
               

               
Cow position:
               
chr11:36914575-36914357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
178, 0
               

               
Conread position:
               
124-357
               

               
Cow position:
               
chr11:48296025-48296248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
177, 30
               

               
Conread position:
               
124-392
               

               
Cow position:
               
chr11:41980213-41979946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 158
               

               
Conread position:
               
124-395
               

               
Cow position:
               
chr11:50472308-50472578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
175, 223
               

               
Conread position:
               
124-401
               

               
Cow position:
               
chr11:77758769-77758496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
157, 100
               

               
Conread position:
               
125-327
               

               
Cow position:
               
chr11:18509038-18508841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
125-329
               

               
Cow position:
               
chr11:85723690-85723890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
176, 72
               

               
Conread position:
               
125-331
               

               
Cow position:
               
chr11:12555313-12555105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
126-304
               

               
Cow position:
               
chr11:77319408-77319583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
175, 109
               

               
Conread position:
               
126-314
               

               
Cow position:
               
chr11:29786505-29786312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
126-316
               

               
Cow position:
               
chr11:18447498-18447318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
174, 101
               

               
Conread position:
               
126-316
               

               
Cow position:
               
chr11:30830620-30830440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
175, 107
               

               
Conread position:
               
126-318
               

               
Cow position:
               
chr11:30964339-30964528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
126-319
               

               
Cow position:
               
chr11:62812956-62812766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
175, 114
               

               
Conread position:
               
126-321
               

               
Cow position:
               
chr11:17676379-17676187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
175, 109
               

               
Conread position:
               
126-321
               

               
Cow position:
               
chr11:52380878-52380684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
175, 108
               

               
Conread position:
               
126-322
               

               
Cow position:
               
chr11:4637178-4636986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
175, 94
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr11:2900727-2900523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr11:7571618-7571810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
175, 101
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr11:21885827-21886020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
175, 47
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr11:60296724-60296928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
126-326
               

               
Cow position:
               
chr11:1625230-1625028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
99, 80
               

               
Conread position:
               
126-326
               

               
Cow position:
               
chr11:29960292-29960486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
175, 28
               

               
Conread position:
               
126-326
               

               
Cow position:
               
chr11:30192174-30192371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
126-327
               

               
Cow position:
               
chr11:62789124-62789321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
175, 104
               

               
Conread position:
               
126-328
               

               
Cow position:
               
chr11:34646583-34646789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
114, 197
               

               
Conread position:
               
126-330
               

               
Cow position:
               
chr11:48659928-48660127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
165, 114
               

               
Conread position:
               
126-330
               

               
Cow position:
               
chr11:75285763-75285560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
106, 6
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr11:2084137-2084346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr11:30895010-30894804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
175, 111
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr11:39060608-39060407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
170, 64
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr11:62620370-62620574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
174, 109
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr11:63866666-63866463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
76, 115
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr11:69977964-69978163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
176, 114
               

               
Conread position:
               
126-333
               

               
Cow position:
               
chr11:2917592-2917393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
176, 96
               

               
Conread position:
               
126-333
               

               
Cow position:
               
chr11:44032005-44032206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
175, 123
               

               
Conread position:
               
126-334
               

               
Cow position:
               
chr11:48085912-48086119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
33, 121
               

               
Conread position:
               
126-336
               

               
Cow position:
               
chr11:39499350-39499557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
126-337
               

               
Cow position:
               
chr11:30867177-30867379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
175, 107
               

               
Conread position:
               
126-346
               

               
Cow position:
               
chr11:35536581-35536787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
175, 32
               

               
Conread position:
               
126-373
               

               
Cow position:
               
chr11:68883712-68883965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
175, 218
               

               
Conread position:
               
127-313
               

               
Cow position:
               
chr11:76248044-76248226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
175, 86
               

               
Conread position:
               
127-316
               

               
Cow position:
               
chr11:50152819-50152630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 111
               

               
Conread position:
               
127-317
               

               
Cow position:
               
chr11:15382508-15382311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
127-323
               

               
Cow position:
               
chr11:83043368-83043177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
174, 108
               

               
Conread position:
               
127-326
               

               
Cow position:
               
chr11:67614927-67614732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
174, 97
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr11:62811292-62811493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
174, 63
               

               
Conread position:
               
127-330
               

               
Cow position:
               
chr11:71021995-71022197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
97, 109
               

               
Conread position:
               
127-331
               

               
Cow position:
               
chr11:62239739-62239939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
173, 115
               

               
Conread position:
               
127-333
               

               
Cow position:
               
chr11:66685911-66685712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 104
               

               
Conread position:
               
128-305
               

               
Cow position:
               
chr11:60720460-60720282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
128-316
               

               
Cow position:
               
chr11:32108693-32108505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
173, 95
               

               
Conread position:
               
128-317
               

               
Cow position:
               
chr11:5486009-5486200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
153, 95
               

               
Conread position:
               
128-320
               

               
Cow position:
               
chr11:17721806-17721613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
173, 107
               

               
Conread position:
               
128-321
               

               
Cow position:
               
chr11:18924741-18924935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
128-323
               

               
Cow position:
               
chr11:6423403-6423208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
173, 105
               

               
Conread position:
               
128-327
               

               
Cow position:
               
chr11:32126607-32126810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
128-329
               

               
Cow position:
               
chr11:63999096-63998894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
128-333
               

               
Cow position:
               
chr11:17889735-17889526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
128-341
               

               
Cow position:
               
chr11:5264092-5264306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
173, 153
               

               
Conread position:
               
129-326
               

               
Cow position:
               
chr11:2484798-2484605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
93, 30
               

               
Conread position:
               
129-327
               

               
Cow position:
               
chr11:44222886-44223075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
172, 21
               

               
Conread position:
               
129-328
               

               
Cow position:
               
chr11:21590381-21590583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
129-333
               

               
Cow position:
               
chr11:42206418-42206615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
172, 105
               

               
Conread position:
               
130-312
               

               
Cow position:
               
chr11:8437696-8437511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
96, 157
               

               
Conread position:
               
130-323
               

               
Cow position:
               
chr11:52297223-52297030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
171, 105
               

               
Conread position:
               
131-330
               

               
Cow position:
               
chr11:2874398-2874599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
103, 8
               

               
Conread position:
               
131-331
               

               
Cow position:
               
chr11:5217463-5217262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
104, 116
               

               
Conread position:
               
133-279
               

               
Cow position:
               
chr11:34136241-34136386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
133-327
               

               
Cow position:
               
chr11:3714821-3715018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
133-329
               

               
Cow position:
               
chr11:3896700-3896502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
133-329
               

               
Cow position:
               
chr11:81614513-81614316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
138, 142
               

               
Conread position:
               
133-330
               

               
Cow position:
               
chr11:27405069-27404874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
92, 21
               

               
Conread position:
               
133-331
               

               
Cow position:
               
chr11:79666261-79666059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
103, 119
               

               
Conread position:
               
133-333
               

               
Cow position:
               
chr11:80008067-80007861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
102, 65
               

               
Conread position:
               
134-328
               

               
Cow position:
               
chr11:40538552-40538743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
34, 109
               

               
Conread position:
               
134-329
               

               
Cow position:
               
chr11:40608592-40608398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
108, 25
               

               
Conread position:
               
135-300
               

               
Cow position:
               
chr11:35960979-35960815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
135-338
               

               
Cow position:
               
chr11:10066351-10066552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
166, 149
               

               
Conread position:
               
139-333
               

               
Cow position:
               
chr11:26442498-26442303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
140-301
               

               
Cow position:
               
chr11:30600184-30600023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
92, 97
               

               
Conread position:
               
140-303
               

               
Cow position:
               
chr11:38201977-38202139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
140-304
               

               
Cow position:
               
chr11:39554184-39554018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
140-305
               

               
Cow position:
               
chr11:5454688-5454522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
140-305
               

               
Cow position:
               
chr11:26343109-26343274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
161, 90
               

               
Conread position:
               
140-323
               

               
Cow position:
               
chr11:6320125-6319939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
140-323
               

               
Cow position:
               
chr11:8496040-8496223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
162, 59
               

               
Conread position:
               
140-324
               

               
Cow position:
               
chr11:66041286-66041463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
161, 102
               

               
Conread position:
               
140-328
               

               
Cow position:
               
chr11:27746931-27747113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
161, 95
               

               
Conread position:
               
140-329
               

               
Cow position:
               
chr11:19148129-19147946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
155, 59
               

               
Conread position:
               
140-329
               

               
Cow position:
               
chr11:67538110-67537920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
140-330
               

               
Cow position:
               
chr11:42497852-42498041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
161, 24
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr11:33373973-33374164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
162, 134
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr11:45619360-45619548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
161, 91
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr11:54428626-54428820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr11:81066042-81065853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
161, 84
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr11:85571798-85571608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
161, 141
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr11:5219153-5218964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
161, 100
               

               
Conread position:
               
140-336
               

               
Cow position:
               
chr11:3597125-3597323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
140-338
               

               
Cow position:
               
chr11:36058804-36059005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr11:35804916-35805123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
140-363
               

               
Cow position:
               
chr11:35924068-35924298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
42, 127
               

               
Conread position:
               
141-322
               

               
Cow position:
               
chr11:7427932-7427745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
141-324
               

               
Cow position:
               
chr11:34747515-34747699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
141-380
               

               
Cow position:
               
chr11:62578811-62579057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
154, 125
               

               
Conread position:
               
149-323
               

               
Cow position:
               
chr11:19549497-19549666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
152, 33
               

               
Conread position:
               
149-327
               

               
Cow position:
               
chr11:33369167-33369347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
150-300
               

               
Cow position:
               
chr11:32198960-32199109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
131, 53
               

               
Conread position:
               
150-338
               

               
Cow position:
               
chr11:36847185-36847374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
151-305
               

               
Cow position:
               
chr11:43641405-43641560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
151-326
               

               
Cow position:
               
chr11:25620372-25620196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
150, 94
               

               
Conread position:
               
151-333
               

               
Cow position:
               
chr11:6580851-6581034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
150, 168
               

               
Conread position:
               
151-353
               

               
Cow position:
               
chr11:49192439-49192237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
71, 191
               

               
Conread position:
               
153-315
               

               
Cow position:
               
chr11:6594219-6594047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
153-316
               

               
Cow position:
               
chr11:72443133-72443297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
153-322
               

               
Cow position:
               
chr11:19657193-19657026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
148, 83
               

               
Conread position:
               
153-323
               

               
Cow position:
               
chr11:37919025-37918858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
128, 39
               

               
Conread position:
               
153-330
               

               
Cow position:
               
chr11:5328806-5328982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
148, 39
               

               
Conread position:
               
153-333
               

               
Cow position:
               
chr11:46245844-46245660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
75, 165
               

               
Conread position:
               
153-333
               

               
Cow position:
               
chr11:64077481-64077303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
146, 56
               

               
Conread position:
               
153-333
               

               
Cow position:
               
chr11:73940543-73940361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
153-334
               

               
Cow position:
               
chr11:9237826-9237647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
149, 124
               

               
Conread position:
               
155-329
               

               
Cow position:
               
chr11:37041994-37042171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
156-258
               

               
Cow position:
               
chr11:5789876-5789774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
156-279
               

               
Cow position:
               
chr11:17807939-17807816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
156-279
               

               
Cow position:
               
chr11:55117468-55117591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
156-300
               

               
Cow position:
               
chr11:64408996-64409132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
156-305
               

               
Cow position:
               
chr11:29677230-29677379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
143, 74
               

               
Conread position:
               
156-312
               

               
Cow position:
               
chr11:63484961-63485111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
145, 78
               

               
Conread position:
               
156-313
               

               
Cow position:
               
chr11:9836433-9836275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-313
               

               
Cow position:
               
chr11:68660591-68660434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
125, 129
               

               
Conread position:
               
156-315
               

               
Cow position:
               
chr11:63407719-63407876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
148, 13
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr11:3739977-3740147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr11:36300558-36300401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
145, 68
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr11:67208276-67208432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
145, 115
               

               
Conread position:
               
156-318
               

               
Cow position:
               
chr11:31875116-31875276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
156-319
               

               
Cow position:
               
chr11:5176353-5176195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
145, 84
               

               
Conread position:
               
156-319
               

               
Cow position:
               
chr11:27907800-27907956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
145, 42
               

               
Conread position:
               
156-320
               

               
Cow position:
               
chr11:3908591-3908427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
139, 13
               

               
Conread position:
               
156-320
               

               
Cow position:
               
chr11:54872736-54872574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
26, 85
               

               
Conread position:
               
156-321
               

               
Cow position:
               
chr11:30370128-30370287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
156-321
               

               
Cow position:
               
chr11:81673449-81673616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
156-322
               

               
Cow position:
               
chr11:34644678-34644847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr11:1067416-1067247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr11:1380699-1380867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr11:3720277-3720445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr11:7652043-7651880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr11:30708530-30708694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
54, 25
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr11:44619978-44620143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
145, 130
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr11:52690497-52690335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
145, 58
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr11:76896351-76896183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-326
               

               
Cow position:
               
chr11:47411864-47412035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
156-327
               

               
Cow position:
               
chr11:4411845-4411679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
139, 69
               

               
Conread position:
               
156-327
               

               
Cow position:
               
chr11:35213144-35212978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
145, 80
               

               
Conread position:
               
156-327
               

               
Cow position:
               
chr11:70600805-70600633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-329
               

               
Cow position:
               
chr11:6245338-6245518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 74
               

               
Conread position:
               
156-329
               

               
Cow position:
               
chr11:53651664-53651836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
145, 126
               

               
Conread position:
               
156-329
               

               
Cow position:
               
chr11:74839634-74839798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
145, 78
               

               
Conread position:
               
156-330
               

               
Cow position:
               
chr11:47784798-47784976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
94, 167
               

               
Conread position:
               
156-330
               

               
Cow position:
               
chr11:57767213-57767387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
145, 97
               

               
Conread position:
               
156-330
               

               
Cow position:
               
chr11:80370137-80370310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
145, 26
               

               
Conread position:
               
156-330
               

               
Cow position:
               
chr11:83397929-83398105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr11:13940209-13940385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
67, 108
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr11:35733060-35732884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 83
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr11:42066888-42067062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 75
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr11:49210798-49210619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
95, 64
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr11:63849928-63849752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr11:80893804-80893981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr11:86664758-86664583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
145, 28
               

               
Conread position:
               
156-332
               

               
Cow position:
               
chr11:38223764-38223594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
145, 43
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr11:4621407-4621236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
146, 78
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr11:8670035-8670217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr11:46010230-46010060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
145, 123
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr11:80923300-80923125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
71, 89
               

               
Conread position:
               
156-334
               

               
Cow position:
               
chr11:46314034-46314214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
80, 88
               

               
Conread position:
               
156-334
               

               
Cow position:
               
chr11:59471125-59471305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
156-339
               

               
Cow position:
               
chr11:53816876-53817062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
156-340
               

               
Cow position:
               
chr11:25968830-25968646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
145, 15
               

               
Conread position:
               
156-340
               

               
Cow position:
               
chr11:27248514-27248695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 84
               

               
Conread position:
               
156-340
               

               
Cow position:
               
chr11:62742622-62742439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
145, 78
               

               
Conread position:
               
156-343
               

               
Cow position:
               
chr11:63475649-63475461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
166, 183
               

               
Conread position:
               
156-343
               

               
Cow position:
               
chr11:68570357-68570170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
145, 74
               

               
Conread position:
               
156-346
               

               
Cow position:
               
chr11:32254193-32253998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
145, 67
               

               
Conread position:
               
156-346
               

               
Cow position:
               
chr11:71303602-71303790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
120, 74
               

               
Conread position:
               
156-349
               

               
Cow position:
               
chr11:66099839-66099641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
76, 192
               

               
Conread position:
               
156-353
               

               
Cow position:
               
chr11:62606440-62606638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-374
               

               
Cow position:
               
chr11:36182718-36182929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
145, 78
               

               
Conread position:
               
156-399
               

               
Cow position:
               
chr11:13864081-13863829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
157-300
               

               
Cow position:
               
chr11:21173413-21173271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
157-331
               

               
Cow position:
               
chr11:62102423-62102246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
157-334
               

               
Cow position:
               
chr11:41278209-41278388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
158-297
               

               
Cow position:
               
chr11:5467107-5467244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
158-316
               

               
Cow position:
               
chr11:5559307-5559466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
119, 128
               

               
Conread position:
               
158-316
               

               
Cow position:
               
chr11:6006337-6006492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
123, 81
               

               
Conread position:
               
158-316
               

               
Cow position:
               
chr11:15369413-15369572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-316
               

               
Cow position:
               
chr11:30322467-30322311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
158-316
               

               
Cow position:
               
chr11:56288570-56288728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
158-318
               

               
Cow position:
               
chr11:68909829-68909667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-321
               

               
Cow position:
               
chr11:47310960-47310796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-323
               

               
Cow position:
               
chr11:32800651-32800817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-328
               

               
Cow position:
               
chr11:37435962-37435796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 81
               

               
Conread position:
               
158-328
               

               
Cow position:
               
chr11:54742055-54741884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
137, 23
               

               
Conread position:
               
158-329
               

               
Cow position:
               
chr11:4363888-4363721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
158-329
               

               
Cow position:
               
chr11:17553055-17552879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
72, 50
               

               
Conread position:
               
158-329
               

               
Cow position:
               
chr11:25614788-25614608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
78, 170
               

               
Conread position:
               
158-329
               

               
Cow position:
               
chr11:36361617-36361444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-331
               

               
Cow position:
               
chr11:21124585-21124410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
158-331
               

               
Cow position:
               
chr11:34778418-34778244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-332
               

               
Cow position:
               
chr11:41140912-41141083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
158-332
               

               
Cow position:
               
chr11:41281070-41281248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
158-333
               

               
Cow position:
               
chr11:50629302-50629471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
157, 81
               

               
Conread position:
               
158-333
               

               
Cow position:
               
chr11:62004445-62004270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
144, 136
               

               
Conread position:
               
158-340
               

               
Cow position:
               
chr11:37564899-37565075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
144, 82
               

               
Conread position:
               
158-375
               

               
Cow position:
               
chr11:24438193-24437978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
143, 24
               

               
Conread position:
               
159-312
               

               
Cow position:
               
chr11:21844110-21843960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
142, 24
               

               
Conread position:
               
159-313
               

               
Cow position:
               
chr11:42065676-42065832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
159-316
               

               
Cow position:
               
chr11:11483338-11483504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
159-316
               

               
Cow position:
               
chr11:63695819-63695655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
159-318
               

               
Cow position:
               
chr11:63483969-63484125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
143, 83
               

               
Conread position:
               
159-319
               

               
Cow position:
               
chr11:8544991-8544833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
159-323
               

               
Cow position:
               
chr11:23220389-23220550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
142, 74
               

               
Conread position:
               
159-330
               

               
Cow position:
               
chr11:62964520-62964692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
52, 22
               

               
Conread position:
               
159-331
               

               
Cow position:
               
chr11:15591448-15591282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
142, 71
               

               
Conread position:
               
159-331
               

               
Cow position:
               
chr11:23278938-23278765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
81, 105
               

               
Conread position:
               
159-331
               

               
Cow position:
               
chr11:30172331-30172498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
142, 70
               

               
Conread position:
               
160-321
               

               
Cow position:
               
chr11:77208102-77208275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
75, 25
               

               
Conread position:
               
160-323
               

               
Cow position:
               
chr11:21894134-21893957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
160-331
               

               
Cow position:
               
chr11:25791667-25791494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
160-331
               

               
Cow position:
               
chr11:36194324-36194492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
141, 85
               

               
Conread position:
               
160-339
               

               
Cow position:
               
chr11:35544112-35544290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
141, 159
               

               
Conread position:
               
160-379
               

               
Cow position:
               
chr11:15881393-15881178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
141, 122
               

               
Conread position:
               
161-327
               

               
Cow position:
               
chr11:68592045-68592213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
162-316
               

               
Cow position:
               
chr11:13279197-13279352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
163-314
               

               
Cow position:
               
chr11:7500779-7500930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
138, 111
               

               
Conread position:
               
163-318
               

               
Cow position:
               
chr11:9691035-9691194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
89, 125
               

               
Conread position:
               
163-318
               

               
Cow position:
               
chr11:30986669-30986821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
138, 71
               

               
Conread position:
               
163-321
               

               
Cow position:
               
chr11:44016274-44016433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
163-321
               

               
Cow position:
               
chr11:73637885-73638044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
138, 27
               

               
Conread position:
               
163-323
               

               
Cow position:
               
chr11:18574825-18574662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
163-323
               

               
Cow position:
               
chr11:30688506-30688345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
163-327
               

               
Cow position:
               
chr11:4443981-4443816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
163-327
               

               
Cow position:
               
chr11:51683246-51683410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
138, 61
               

               
Conread position:
               
163-328
               

               
Cow position:
               
chr11:66188286-66188126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
138, 48
               

               
Conread position:
               
163-330
               

               
Cow position:
               
chr11:17369561-17369722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
138, 77
               

               
Conread position:
               
163-331
               

               
Cow position:
               
chr11:36104343-36104509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
11, 128
               

               
Conread position:
               
163-332
               

               
Cow position:
               
chr11:65431549-65431718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
65, 78
               

               
Conread position:
               
163-333
               

               
Cow position:
               
chr11:6429727-6429552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
164-296
               

               
Cow position:
               
chr11:63202217-63202085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
164-315
               

               
Cow position:
               
chr11:87155551-87155699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
164-316
               

               
Cow position:
               
chr11:35352009-35351850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
164-323
               

               
Cow position:
               
chr11:26057619-26057457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
164-323
               

               
Cow position:
               
chr11:67931461-67931301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
164-327
               

               
Cow position:
               
chr11:41213082-41213246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
66, 5
               

               
Conread position:
               
164-329
               

               
Cow position:
               
chr11:17508519-17508354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
137, 15
               

               
Conread position:
               
165-410
               

               
Cow position:
               
chr11:65436253-65436506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 110
               

               
Conread position:
               
166-268
               

               
Cow position:
               
chr11:7924560-7924458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
166-319
               

               
Cow position:
               
chr11:12768432-12768582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
135, 57
               

               
Conread position:
               
166-328
               

               
Cow position:
               
chr11:12742457-12742299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
135, 63
               

               
Conread position:
               
166-330
               

               
Cow position:
               
chr11:14492537-14492370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
166-330
               

               
Cow position:
               
chr11:18119537-18119698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
166-330
               

               
Cow position:
               
chr11:70821078-70821243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
38, 43
               

               
Conread position:
               
166-338
               

               
Cow position:
               
chr11:64126244-64126417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
169-316
               

               
Cow position:
               
chr11:32817780-32817633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 51
               

               
Conread position:
               
169-323
               

               
Cow position:
               
chr11:28078530-28078679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
132, 65
               

               
Conread position:
               
169-329
               

               
Cow position:
               
chr11:42837052-42837211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
132, 55
               

               
Conread position:
               
169-331
               

               
Cow position:
               
chr11:1265507-1265345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
63, 78
               

               
Conread position:
               
169-331
               

               
Cow position:
               
chr11:24551427-24551589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
45, 12
               

               
Conread position:
               
169-331
               

               
Cow position:
               
chr11:33271467-33271627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
133, 55
               

               
Conread position:
               
169-331
               

               
Cow position:
               
chr11:63491054-63491217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
170-316
               

               
Cow position:
               
chr11:2830694-2830839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 68
               

               
Conread position:
               
170-333
               

               
Cow position:
               
chr11:41134042-41133881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
132, 78
               

               
Conread position:
               
170-392
               

               
Cow position:
               
chr11:9088079-9087860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
129, 38
               

               
Conread position:
               
171-326
               

               
Cow position:
               
chr11:38657145-38656989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
172-317
               

               
Cow position:
               
chr11:80695203-80695057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
172-328
               

               
Cow position:
               
chr11:4389941-4390096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
130, 146
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr11:23279116-23278956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
56, 149
               

               
Conread position:
               
180-316
               

               
Cow position:
               
chr11:64029219-64029084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
121, 33
               

               
Conread position:
               
180-326
               

               
Cow position:
               
chr11:38643589-38643737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
180-341
               

               
Cow position:
               
chr11:53460744-53460904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
39, 45
               

               
Conread position:
               
181-323
               

               
Cow position:
               
chr11:65939814-65939672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
181-329
               

               
Cow position:
               
chr11:6259038-6258889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
181-406
               

               
Cow position:
               
chr11:70634735-70634964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
59, 177
               

               
Conread position:
               
182-331
               

               
Cow position:
               
chr11:69035208-69035357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
99, 103
               

               
Conread position:
               
187-329
               

               
Cow position:
               
chr11:32587069-32586930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
187-329
               

               
Cow position:
               
chr11:63977112-63977251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
115, 53
               

               
Conread position:
               
187-332
               

               
Cow position:
               
chr11:36136159-36136307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
187-350
               

               
Cow position:
               
chr11:64607196-64607028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
189-304
               

               
Cow position:
               
chr11:67417865-67417980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 50
               

               
Conread position:
               
190-300
               

               
Cow position:
               
chr11:899491-899602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
190-314
               

               
Cow position:
               
chr11:43594371-43594247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
111, 40
               

               
Conread position:
               
191-340
               

               
Cow position:
               
chr11:43737049-43736899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
48, 15
               

               
Conread position:
               
193-328
               

               
Cow position:
               
chr11:28850309-28850444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
193-329
               

               
Cow position:
               
chr11:53888590-53888451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
193-338
               

               
Cow position:
               
chr11:15745025-15744877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
106, 31
               

               
Conread position:
               
196-314
               

               
Cow position:
               
chr11:32584883-32585002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
199-337
               

               
Cow position:
               
chr11:70273527-70273664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
102, 91
               

               
Conread position:
               
203-341
               

               
Cow position:
               
chr11:68909465-68909324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
204-336
               

               
Cow position:
               
chr11:28092521-28092653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
98, 118
               

               
Conread position:
               
205-323
               

               
Cow position:
               
chr11:81043461-81043342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
96, 0
               
Show alignments to all cow chromosomes.