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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8047J22.3
        

               
Conread position:
               
49-331
               

               
Cow position:
               
chr13:33854634-33854910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
61, 40
               

               
Conread position:
               
91-300
               

               
Cow position:
               
chr13:20795198-20795404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
37, 92
               

               
Conread position:
               
95-317
               

               
Cow position:
               
chr13:17057843-17058070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
19, 30
               

               
Conread position:
               
98-321
               

               
Cow position:
               
chr13:41115845-41115622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
104-316
               

               
Cow position:
               
chr13:39826548-39826342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
197, 13
               

               
Conread position:
               
107-333
               

               
Cow position:
               
chr13:23805022-23805252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
108-300
               

               
Cow position:
               
chr13:5906644-5906834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
108-326
               

               
Cow position:
               
chr13:60509130-60509348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
192, 5
               

               
Conread position:
               
109-251
               

               
Cow position:
               
chr13:39398642-39398501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
109-304
               

               
Cow position:
               
chr13:54353052-54353245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
193, 8
               

               
Conread position:
               
109-316
               

               
Cow position:
               
chr13:9906724-9906515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
13, 8
               

               
Conread position:
               
109-321
               

               
Cow position:
               
chr13:4790128-4790341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
25, 8
               

               
Conread position:
               
109-321
               

               
Cow position:
               
chr13:15041483-15041692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
27, 8
               

               
Conread position:
               
109-322
               

               
Cow position:
               
chr13:18999524-18999312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr13:6889733-6889519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
146, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr13:7059451-7059238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
193, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr13:47675946-47676157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
167, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr13:48222559-48222769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-323
               

               
Cow position:
               
chr13:55081131-55080916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
162, 8
               

               
Conread position:
               
109-324
               

               
Cow position:
               
chr13:27550728-27550512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
193, 8
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr13:26726617-26726833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-327
               

               
Cow position:
               
chr13:54128607-54128824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-328
               

               
Cow position:
               
chr13:5263292-5263504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-329
               

               
Cow position:
               
chr13:11202033-11201812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 137
               

               
Conread position:
               
109-330
               

               
Cow position:
               
chr13:13338845-13338629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
186, 8
               

               
Conread position:
               
109-330
               

               
Cow position:
               
chr13:52640959-52641178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
189, 8
               

               
Conread position:
               
109-331
               

               
Cow position:
               
chr13:25941274-25941490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
109-335
               

               
Cow position:
               
chr13:14411884-14411659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
110-316
               

               
Cow position:
               
chr13:21280506-21280714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
110-352
               

               
Cow position:
               
chr13:12770207-12770440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
175, 14
               

               
Conread position:
               
111-304
               

               
Cow position:
               
chr13:11670798-11670605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
190, 13
               

               
Conread position:
               
112-323
               

               
Cow position:
               
chr13:6113537-6113752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
113-329
               

               
Cow position:
               
chr13:12449002-12449207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
188, 11
               

               
Conread position:
               
115-317
               

               
Cow position:
               
chr13:11410698-11410494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
71, 9
               

               
Conread position:
               
115-331
               

               
Cow position:
               
chr13:1791440-1791660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
115-333
               

               
Cow position:
               
chr13:24121757-24121547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
116-279
               

               
Cow position:
               
chr13:25547599-25547761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
116-312
               

               
Cow position:
               
chr13:6974144-6973953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
116-312
               

               
Cow position:
               
chr13:16908200-16908004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
180, 8
               

               
Conread position:
               
116-314
               

               
Cow position:
               
chr13:2776271-2776073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-314
               

               
Cow position:
               
chr13:10989091-10989285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
122, 8
               

               
Conread position:
               
116-316
               

               
Cow position:
               
chr13:20042282-20042477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-322
               

               
Cow position:
               
chr13:53865619-53865416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
183, 8
               

               
Conread position:
               
116-322
               

               
Cow position:
               
chr13:55765195-55765395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
53, 8
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr13:8637681-8637474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr13:10924938-10925143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
186, 7
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr13:12875992-12876196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr13:12923857-12923654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr13:15997017-15996816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr13:20844883-20845090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
116-323
               

               
Cow position:
               
chr13:28552571-28552366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-327
               

               
Cow position:
               
chr13:6896378-6896161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
116-327
               

               
Cow position:
               
chr13:49356066-49356273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
116-327
               

               
Cow position:
               
chr13:59170636-59170418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
106, 8
               

               
Conread position:
               
116-329
               

               
Cow position:
               
chr13:42302057-42302267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
185, 9
               

               
Conread position:
               
116-330
               

               
Cow position:
               
chr13:20088732-20088946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
181, 8
               

               
Conread position:
               
116-331
               

               
Cow position:
               
chr13:18995106-18994894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
185, 38
               

               
Conread position:
               
116-331
               

               
Cow position:
               
chr13:41157388-41157169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
114, 8
               

               
Conread position:
               
116-331
               

               
Cow position:
               
chr13:45353014-45352798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
185, 7
               

               
Conread position:
               
116-333
               

               
Cow position:
               
chr13:50457841-50457621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
107, 8
               

               
Conread position:
               
116-336
               

               
Cow position:
               
chr13:43595126-43595340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
186, 8
               

               
Conread position:
               
117-315
               

               
Cow position:
               
chr13:8699755-8699955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
131, 7
               

               
Conread position:
               
117-323
               

               
Cow position:
               
chr13:44278331-44278126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
117-329
               

               
Cow position:
               
chr13:25495989-25495784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
7, 125
               

               
Conread position:
               
117-339
               

               
Cow position:
               
chr13:11933619-11933844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
117-355
               

               
Cow position:
               
chr13:15993370-15993128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
8, 66
               

               
Conread position:
               
118-337
               

               
Cow position:
               
chr13:31507463-31507676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
91, 9
               

               
Conread position:
               
119-323
               

               
Cow position:
               
chr13:12768937-12769143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
120-346
               

               
Cow position:
               
chr13:19023868-19024094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
181, 214
               

               
Conread position:
               
121-323
               

               
Cow position:
               
chr13:17845467-17845264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
122-332
               

               
Cow position:
               
chr13:23975188-23975394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
5, 60
               

               
Conread position:
               
123-251
               

               
Cow position:
               
chr13:26369500-26369373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
123-307
               

               
Cow position:
               
chr13:48597885-48597705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
176, 5
               

               
Conread position:
               
123-313
               

               
Cow position:
               
chr13:20288312-20288128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
179, 31
               

               
Conread position:
               
123-317
               

               
Cow position:
               
chr13:33054396-33054587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
178, 90
               

               
Conread position:
               
123-329
               

               
Cow position:
               
chr13:34532955-34533156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
178, 117
               

               
Conread position:
               
123-333
               

               
Cow position:
               
chr13:25579213-25579421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
123-349
               

               
Cow position:
               
chr13:5758365-5758587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 103
               

               
Conread position:
               
124-279
               

               
Cow position:
               
chr13:17716538-17716693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
124-300
               

               
Cow position:
               
chr13:6926493-6926316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
124-300
               

               
Cow position:
               
chr13:13316662-13316486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
124-307
               

               
Cow position:
               
chr13:17338407-17338221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
124-316
               

               
Cow position:
               
chr13:13527005-13527188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
178, 66
               

               
Conread position:
               
124-316
               

               
Cow position:
               
chr13:46516037-46515846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
100, 163
               

               
Conread position:
               
124-316
               

               
Cow position:
               
chr13:52913849-52913663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
177, 108
               

               
Conread position:
               
124-317
               

               
Cow position:
               
chr13:37592970-37593160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
53, 158
               

               
Conread position:
               
124-320
               

               
Cow position:
               
chr13:37751091-37751284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
124-321
               

               
Cow position:
               
chr13:13775267-13775471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr13:9124900-9124708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
177, 58
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr13:19033534-19033334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
177, 100
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr13:42672447-42672650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
124-323
               

               
Cow position:
               
chr13:50646655-50646848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
177, 116
               

               
Conread position:
               
124-325
               

               
Cow position:
               
chr13:369147-369351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
177, 73
               

               
Conread position:
               
124-325
               

               
Cow position:
               
chr13:18166708-18166509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
177, 118
               

               
Conread position:
               
124-326
               

               
Cow position:
               
chr13:44003677-44003476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
111, 106
               

               
Conread position:
               
124-327
               

               
Cow position:
               
chr13:11434599-11434800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
170, 84
               

               
Conread position:
               
124-327
               

               
Cow position:
               
chr13:17813447-17813246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
177, 121
               

               
Conread position:
               
124-328
               

               
Cow position:
               
chr13:13796835-13797044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
124-328
               

               
Cow position:
               
chr13:37985768-37985972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
177, 195
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr13:24230190-24229984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr13:37069321-37069112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
124-329
               

               
Cow position:
               
chr13:52055616-52055816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
177, 119
               

               
Conread position:
               
124-330
               

               
Cow position:
               
chr13:30315483-30315273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
124-330
               

               
Cow position:
               
chr13:40491191-40490989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
90, 117
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr13:5279222-5279437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
124-331
               

               
Cow position:
               
chr13:37775231-37775434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
177, 90
               

               
Conread position:
               
124-333
               

               
Cow position:
               
chr13:18877182-18876970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
124-333
               

               
Cow position:
               
chr13:56034882-56035087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
21, 117
               

               
Conread position:
               
124-335
               

               
Cow position:
               
chr13:21129104-21128891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
171, 137
               

               
Conread position:
               
124-340
               

               
Cow position:
               
chr13:40541129-40541349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
177, 0
               

               
Conread position:
               
124-399
               

               
Cow position:
               
chr13:45499205-45498936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
177, 115
               

               
Conread position:
               
125-270
               

               
Cow position:
               
chr13:6975870-6976009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
125-272
               

               
Cow position:
               
chr13:37980783-37980927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
125-337
               

               
Cow position:
               
chr13:11147032-11146817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
176, 0
               

               
Conread position:
               
125-342
               

               
Cow position:
               
chr13:16163557-16163355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
126-285
               

               
Cow position:
               
chr13:20666415-20666567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
126-286
               

               
Cow position:
               
chr13:23479004-23478846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
126-316
               

               
Cow position:
               
chr13:26261814-26262005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
126-316
               

               
Cow position:
               
chr13:55674234-55674423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
176, 109
               

               
Conread position:
               
126-317
               

               
Cow position:
               
chr13:16099147-16099343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
126-317
               

               
Cow position:
               
chr13:20784564-20784380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
175, 108
               

               
Conread position:
               
126-318
               

               
Cow position:
               
chr13:18058276-18058462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
175, 84
               

               
Conread position:
               
126-321
               

               
Cow position:
               
chr13:53850798-53850602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
126-322
               

               
Cow position:
               
chr13:34261205-34261016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
175, 108
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr13:14576187-14575995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
175, 108
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr13:21170499-21170307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
176, 7
               

               
Conread position:
               
126-323
               

               
Cow position:
               
chr13:25817500-25817309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
176, 35
               

               
Conread position:
               
126-326
               

               
Cow position:
               
chr13:13320771-13320574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
175, 108
               

               
Conread position:
               
126-327
               

               
Cow position:
               
chr13:21171596-21171796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
16, 138
               

               
Conread position:
               
126-327
               

               
Cow position:
               
chr13:21275833-21275633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
175, 146
               

               
Conread position:
               
126-328
               

               
Cow position:
               
chr13:38329590-38329394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
175, 108
               

               
Conread position:
               
126-329
               

               
Cow position:
               
chr13:5671612-5671811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
175, 116
               

               
Conread position:
               
126-330
               

               
Cow position:
               
chr13:11103225-11103436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
126-330
               

               
Cow position:
               
chr13:19883063-19883262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
175, 64
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr13:151937-151742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
175, 109
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr13:21246735-21246941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
175, 0
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr13:49392978-49393177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
175, 6
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr13:52057531-52057327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
166, 109
               

               
Conread position:
               
126-331
               

               
Cow position:
               
chr13:54582846-54582646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
175, 43
               

               
Conread position:
               
126-333
               

               
Cow position:
               
chr13:18197634-18197837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
175, 116
               

               
Conread position:
               
126-333
               

               
Cow position:
               
chr13:32283102-32282896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
126-338
               

               
Cow position:
               
chr13:15257395-15257600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
175, 38
               

               
Conread position:
               
127-308
               

               
Cow position:
               
chr13:12673322-12673493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
175, 70
               

               
Conread position:
               
127-316
               

               
Cow position:
               
chr13:14063548-14063734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
174, 103
               

               
Conread position:
               
127-316
               

               
Cow position:
               
chr13:21288112-21288298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
174, 103
               

               
Conread position:
               
127-328
               

               
Cow position:
               
chr13:17611579-17611777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
174, 106
               

               
Conread position:
               
127-332
               

               
Cow position:
               
chr13:13196212-13196009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
174, 106
               

               
Conread position:
               
127-353
               

               
Cow position:
               
chr13:17021753-17021976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
168, 56
               

               
Conread position:
               
128-300
               

               
Cow position:
               
chr13:19778881-19779051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
128-314
               

               
Cow position:
               
chr13:20115220-20115033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
128-329
               

               
Cow position:
               
chr13:34873561-34873357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
128-331
               

               
Cow position:
               
chr13:6616787-6616991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
128-331
               

               
Cow position:
               
chr13:14927230-14927023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
163, 10
               

               
Conread position:
               
128-331
               

               
Cow position:
               
chr13:37554902-37555099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
173, 31
               

               
Conread position:
               
128-336
               

               
Cow position:
               
chr13:21110654-21110436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
112, 145
               

               
Conread position:
               
129-320
               

               
Cow position:
               
chr13:5092422-5092614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
5, 102
               

               
Conread position:
               
129-335
               

               
Cow position:
               
chr13:13089000-13088800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
172, 85
               

               
Conread position:
               
130-327
               

               
Cow position:
               
chr13:20534866-20534673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
171, 76
               

               
Conread position:
               
131-316
               

               
Cow position:
               
chr13:23685030-23685216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
131-323
               

               
Cow position:
               
chr13:4968579-4968772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
170, 0
               

               
Conread position:
               
131-331
               

               
Cow position:
               
chr13:24107579-24107774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
170, 104
               

               
Conread position:
               
132-328
               

               
Cow position:
               
chr13:17569132-17569323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
8, 83
               

               
Conread position:
               
133-296
               

               
Cow position:
               
chr13:1037606-1037445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
133-304
               

               
Cow position:
               
chr13:49476045-49475870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
133-308
               

               
Cow position:
               
chr13:52027170-52027341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
148, 107
               

               
Conread position:
               
133-316
               

               
Cow position:
               
chr13:14645019-14644840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 107
               

               
Conread position:
               
133-323
               

               
Cow position:
               
chr13:11565804-11565618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
168, 101
               

               
Conread position:
               
133-327
               

               
Cow position:
               
chr13:37344765-37344570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
133-329
               

               
Cow position:
               
chr13:6189633-6189826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
168, 107
               

               
Conread position:
               
133-331
               

               
Cow position:
               
chr13:11543536-11543332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
133-331
               

               
Cow position:
               
chr13:32017545-32017744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
133-333
               

               
Cow position:
               
chr13:26959830-26960029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 59
               

               
Conread position:
               
134-279
               

               
Cow position:
               
chr13:17135247-17135393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
139-311
               

               
Cow position:
               
chr13:35557150-35557319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
162, 101
               

               
Conread position:
               
139-318
               

               
Cow position:
               
chr13:37614235-37614413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
162, 95
               

               
Conread position:
               
139-333
               

               
Cow position:
               
chr13:19279056-19278865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
162, 95
               

               
Conread position:
               
140-288
               

               
Cow position:
               
chr13:13932211-13932359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
140-323
               

               
Cow position:
               
chr13:4417071-4416888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
155, 67
               

               
Conread position:
               
140-323
               

               
Cow position:
               
chr13:39376482-39376298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
140-323
               

               
Cow position:
               
chr13:46349944-46350127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
162, 121
               

               
Conread position:
               
140-323
               

               
Cow position:
               
chr13:57436431-57436621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
140-327
               

               
Cow position:
               
chr13:16247608-16247420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
140-330
               

               
Cow position:
               
chr13:62251884-62252074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
161, 84
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr13:19427595-19427407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
156, 92
               

               
Conread position:
               
140-331
               

               
Cow position:
               
chr13:20367919-20368111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr13:7038296-7038104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
162, 134
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr13:16292501-16292308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
98, 73
               

               
Conread position:
               
140-333
               

               
Cow position:
               
chr13:20893681-20893873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
161, 27
               

               
Conread position:
               
140-333
               

               
Cow position:
               
chr13:26316926-26317123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
140-347
               

               
Cow position:
               
chr13:881986-881772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
162, 0
               

               
Conread position:
               
140-394
               

               
Cow position:
               
chr13:26093576-26093322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 150
               

               
Conread position:
               
141-321
               

               
Cow position:
               
chr13:55775319-55775145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
158, 42
               

               
Conread position:
               
141-325
               

               
Cow position:
               
chr13:13265520-13265343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
160, 81
               

               
Conread position:
               
144-316
               

               
Cow position:
               
chr13:55007814-55007983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 97
               

               
Conread position:
               
144-334
               

               
Cow position:
               
chr13:17994417-17994604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
157, 74
               

               
Conread position:
               
147-323
               

               
Cow position:
               
chr13:10522890-10522719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
149, 85
               

               
Conread position:
               
148-336
               

               
Cow position:
               
chr13:20370716-20370902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
153, 142
               

               
Conread position:
               
149-323
               

               
Cow position:
               
chr13:390689-390859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
153, 85
               

               
Conread position:
               
149-323
               

               
Cow position:
               
chr13:37946438-37946606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
152, 76
               

               
Conread position:
               
149-331
               

               
Cow position:
               
chr13:15162681-15162864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
149-339
               

               
Cow position:
               
chr13:25926741-25926553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
152, 94
               

               
Conread position:
               
150-300
               

               
Cow position:
               
chr13:26847878-26848027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
43, 94
               

               
Conread position:
               
151-319
               

               
Cow position:
               
chr13:19223604-19223435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
151-330
               

               
Cow position:
               
chr13:14940750-14940570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
151-330
               

               
Cow position:
               
chr13:21194837-21195011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
145, 89
               

               
Conread position:
               
151-334
               

               
Cow position:
               
chr13:20261381-20261565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
150, 176
               

               
Conread position:
               
152-337
               

               
Cow position:
               
chr13:48128892-48129084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
153-300
               

               
Cow position:
               
chr13:13251464-13251608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
153-300
               

               
Cow position:
               
chr13:51128125-51128272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
153-301
               

               
Cow position:
               
chr13:27869907-27869761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
153-308
               

               
Cow position:
               
chr13:61001793-61001637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
153-312
               

               
Cow position:
               
chr13:53390486-53390322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
153-314
               

               
Cow position:
               
chr13:15872388-15872226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
153-329
               

               
Cow position:
               
chr13:46391302-46391129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
148, 128
               

               
Conread position:
               
153-330
               

               
Cow position:
               
chr13:36949449-36949627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
83, 167
               

               
Conread position:
               
153-331
               

               
Cow position:
               
chr13:2420595-2420416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
153-331
               

               
Cow position:
               
chr13:20156126-20155946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
153-332
               

               
Cow position:
               
chr13:17787676-17787857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
153-333
               

               
Cow position:
               
chr13:18846350-18846166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
58, 171
               

               
Conread position:
               
153-333
               

               
Cow position:
               
chr13:21866686-21866863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
148, 58
               

               
Conread position:
               
153-336
               

               
Cow position:
               
chr13:10715810-10715624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
148, 96
               

               
Conread position:
               
153-349
               

               
Cow position:
               
chr13:50589382-50589582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
134, 69
               

               
Conread position:
               
156-304
               

               
Cow position:
               
chr13:8667563-8667414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-307
               

               
Cow position:
               
chr13:50715092-50714942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
145, 87
               

               
Conread position:
               
156-311
               

               
Cow position:
               
chr13:16714321-16714473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr13:19588816-19588655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr13:21955121-21955283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr13:25520971-25521137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr13:42200563-42200407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
145, 83
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr13:48127052-48126891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr13:56019050-56019210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
145, 98
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr13:56431881-56432035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
145, 78
               

               
Conread position:
               
156-316
               

               
Cow position:
               
chr13:62008051-62007894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
145, 83
               

               
Conread position:
               
156-317
               

               
Cow position:
               
chr13:22345330-22345489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
156-317
               

               
Cow position:
               
chr13:31398403-31398243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
145, 49
               

               
Conread position:
               
156-318
               

               
Cow position:
               
chr13:53619948-53619785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-319
               

               
Cow position:
               
chr13:6972327-6972164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
145, 118
               

               
Conread position:
               
156-321
               

               
Cow position:
               
chr13:41806716-41806558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
145, 80
               

               
Conread position:
               
156-322
               

               
Cow position:
               
chr13:27180985-27180818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr13:5175541-5175380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
145, 32
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr13:9551305-9551143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
145, 82
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr13:14544079-14543914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
146, 116
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr13:14796153-14795984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr13:20520259-20520089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr13:21009783-21009606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
156-323
               

               
Cow position:
               
chr13:33518012-33518179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 25
               

               
Conread position:
               
156-327
               

               
Cow position:
               
chr13:21127393-21127564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
69, 135
               

               
Conread position:
               
156-327
               

               
Cow position:
               
chr13:22122656-22122485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
146, 34
               

               
Conread position:
               
156-327
               

               
Cow position:
               
chr13:24160396-24160225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
146, 34
               

               
Conread position:
               
156-328
               

               
Cow position:
               
chr13:14351526-14351356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
145, 29
               

               
Conread position:
               
156-329
               

               
Cow position:
               
chr13:584926-585100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-329
               

               
Cow position:
               
chr13:22729458-22729632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-329
               

               
Cow position:
               
chr13:23478846-23478674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
145, 77
               

               
Conread position:
               
156-330
               

               
Cow position:
               
chr13:3149487-3149660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
145, 87
               

               
Conread position:
               
156-330
               

               
Cow position:
               
chr13:16711293-16711119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
145, 68
               

               
Conread position:
               
156-330
               

               
Cow position:
               
chr13:54236751-54236581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
145, 25
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr13:5910952-5911119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 43
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr13:19178122-19177939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr13:20378376-20378546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
148, 74
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr13:21024931-21024753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
89, 25
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr13:26377472-26377649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr13:28605447-28605623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
145, 0
               

               
Conread position:
               
156-331
               

               
Cow position:
               
chr13:62238710-62238535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 47
               

               
Conread position:
               
156-332
               

               
Cow position:
               
chr13:28376616-28376791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
145, 68
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr13:13781124-13780946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
71, 42
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr13:17823006-17823184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
145, 78
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr13:20137765-20137588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
145, 152
               

               
Conread position:
               
156-333
               

               
Cow position:
               
chr13:43342512-43342337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
145, 55
               

               
Conread position:
               
156-334
               

               
Cow position:
               
chr13:620305-620478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
145, 41
               

               
Conread position:
               
156-334
               

               
Cow position:
               
chr13:10220905-10220724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
156-334
               

               
Cow position:
               
chr13:17975019-17975192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
68, 88
               

               
Conread position:
               
156-334
               

               
Cow position:
               
chr13:26900994-26900815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
156-339
               

               
Cow position:
               
chr13:1339197-1339380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
145, 164
               

               
Conread position:
               
156-339
               

               
Cow position:
               
chr13:5659823-5660000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
146, 81
               

               
Conread position:
               
156-340
               

               
Cow position:
               
chr13:9108731-9108910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
144, 58
               

               
Conread position:
               
156-347
               

               
Cow position:
               
chr13:43811884-43811687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
71, 186
               

               
Conread position:
               
156-348
               

               
Cow position:
               
chr13:50768543-50768346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
156-368
               

               
Cow position:
               
chr13:1322607-1322392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
145, 36
               

               
Conread position:
               
156-401
               

               
Cow position:
               
chr13:33256443-33256198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
144, 8
               

               
Conread position:
               
156-402
               

               
Cow position:
               
chr13:43576958-43576709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
145, 163
               

               
Conread position:
               
157-300
               

               
Cow position:
               
chr13:24155458-24155314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
157-307
               

               
Cow position:
               
chr13:6861124-6860971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
157-315
               

               
Cow position:
               
chr13:10055365-10055204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
7, 130
               

               
Conread position:
               
157-316
               

               
Cow position:
               
chr13:15195262-15195414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
144, 52
               

               
Conread position:
               
157-321
               

               
Cow position:
               
chr13:13504324-13504488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
144, 162
               

               
Conread position:
               
157-323
               

               
Cow position:
               
chr13:29665964-29665795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
157-326
               

               
Cow position:
               
chr13:8362800-8362972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
157-329
               

               
Cow position:
               
chr13:19222617-19222444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
7, 80
               

               
Conread position:
               
157-330
               

               
Cow position:
               
chr13:10986558-10986734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
61, 165
               

               
Conread position:
               
157-331
               

               
Cow position:
               
chr13:5825988-5826164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
157-331
               

               
Cow position:
               
chr13:28536374-28536549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
157-333
               

               
Cow position:
               
chr13:8537765-8537587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
157-333
               

               
Cow position:
               
chr13:26100332-26100156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
68, 24
               

               
Conread position:
               
157-337
               

               
Cow position:
               
chr13:20271282-20271468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
157-338
               

               
Cow position:
               
chr13:20698340-20698522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
124, 163
               

               
Conread position:
               
157-340
               

               
Cow position:
               
chr13:10279868-10279685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
144, 135
               

               
Conread position:
               
158-314
               

               
Cow position:
               
chr13:40483037-40483191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
158-316
               

               
Cow position:
               
chr13:24215732-24215890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
123, 65
               

               
Conread position:
               
158-316
               

               
Cow position:
               
chr13:54127885-54128044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
67, 44
               

               
Conread position:
               
158-317
               

               
Cow position:
               
chr13:26957254-26957094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-321
               

               
Cow position:
               
chr13:17044571-17044407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-322
               

               
Cow position:
               
chr13:9900100-9899927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
95, 33
               

               
Conread position:
               
158-323
               

               
Cow position:
               
chr13:16476799-16476633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-323
               

               
Cow position:
               
chr13:49823969-49823803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-327
               

               
Cow position:
               
chr13:20174683-20174512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
138, 82
               

               
Conread position:
               
158-329
               

               
Cow position:
               
chr13:26291255-26291084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
143, 105
               

               
Conread position:
               
158-330
               

               
Cow position:
               
chr13:24094372-24094544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
158-330
               

               
Cow position:
               
chr13:53847179-53847346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
143, 79
               

               
Conread position:
               
158-331
               

               
Cow position:
               
chr13:10423463-10423292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
143, 76
               

               
Conread position:
               
158-331
               

               
Cow position:
               
chr13:26480262-26480431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
143, 74
               

               
Conread position:
               
158-331
               

               
Cow position:
               
chr13:28587800-28587974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
158-333
               

               
Cow position:
               
chr13:27027960-27028135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
158-335
               

               
Cow position:
               
chr13:3153692-3153515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
158-341
               

               
Cow position:
               
chr13:17979042-17979224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
143, 66
               

               
Conread position:
               
158-353
               

               
Cow position:
               
chr13:30148621-30148809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
143, 82
               

               
Conread position:
               
159-308
               

               
Cow position:
               
chr13:37803832-37803674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
159-314
               

               
Cow position:
               
chr13:46347075-46346919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
159-316
               

               
Cow position:
               
chr13:15288980-15289132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
143, 75
               

               
Conread position:
               
159-316
               

               
Cow position:
               
chr13:38035779-38035626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
123, 71
               

               
Conread position:
               
159-327
               

               
Cow position:
               
chr13:51198752-51198585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
122, 13
               

               
Conread position:
               
159-329
               

               
Cow position:
               
chr13:47651475-47651643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
143, 71
               

               
Conread position:
               
159-331
               

               
Cow position:
               
chr13:5930364-5930538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
82, 132
               

               
Conread position:
               
159-331
               

               
Cow position:
               
chr13:6951520-6951353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
142, 74
               

               
Conread position:
               
159-331
               

               
Cow position:
               
chr13:49204949-49204783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
142, 104
               

               
Conread position:
               
159-333
               

               
Cow position:
               
chr13:21981033-21981199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
139, 36
               

               
Conread position:
               
159-333
               

               
Cow position:
               
chr13:22115619-22115447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
142, 119
               

               
Conread position:
               
160-300
               

               
Cow position:
               
chr13:12185666-12185805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
57, 48
               

               
Conread position:
               
160-312
               

               
Cow position:
               
chr13:19393232-19393087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
141, 72
               

               
Conread position:
               
160-327
               

               
Cow position:
               
chr13:23399706-23399542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
141, 74
               

               
Conread position:
               
160-331
               

               
Cow position:
               
chr13:28081662-28081488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
160-331
               

               
Cow position:
               
chr13:43102923-43102752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 38
               

               
Conread position:
               
160-333
               

               
Cow position:
               
chr13:22046071-22046240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
141, 104
               

               
Conread position:
               
161-316
               

               
Cow position:
               
chr13:15114410-15114254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
161-334
               

               
Cow position:
               
chr13:29805078-29805244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
139, 75
               

               
Conread position:
               
161-405
               

               
Cow position:
               
chr13:29507556-29507305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
69, 168
               

               
Conread position:
               
163-324
               

               
Cow position:
               
chr13:58024976-58025138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
163-328
               

               
Cow position:
               
chr13:7097523-7097360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
139, 79
               

               
Conread position:
               
163-331
               

               
Cow position:
               
chr13:42203962-42203793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 67
               

               
Conread position:
               
163-332
               

               
Cow position:
               
chr13:8682392-8682222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
163-341
               

               
Cow position:
               
chr13:20854519-20854699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
71, 51
               

               
Conread position:
               
163-364
               

               
Cow position:
               
chr13:14782279-14782087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
139, 70
               

               
Conread position:
               
163-395
               

               
Cow position:
               
chr13:11439090-11439308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
138, 77
               

               
Conread position:
               
164-268
               

               
Cow position:
               
chr13:55266353-55266249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
164-316
               

               
Cow position:
               
chr13:20497582-20497429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
164-328
               

               
Cow position:
               
chr13:10102608-10102782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
15, 28
               

               
Conread position:
               
164-330
               

               
Cow position:
               
chr13:20789581-20789746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
137, 66
               

               
Conread position:
               
164-330
               

               
Cow position:
               
chr13:52477711-52477872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
137, 24
               

               
Conread position:
               
166-321
               

               
Cow position:
               
chr13:48370367-48370519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
135, 87
               

               
Conread position:
               
166-331
               

               
Cow position:
               
chr13:2529016-2529182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
135, 58
               

               
Conread position:
               
166-331
               

               
Cow position:
               
chr13:2776794-2776628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
166-331
               

               
Cow position:
               
chr13:18814678-18814507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
166-333
               

               
Cow position:
               
chr13:8367652-8367487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
134, 80
               

               
Conread position:
               
166-333
               

               
Cow position:
               
chr13:15869048-15868879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
166-339
               

               
Cow position:
               
chr13:3387854-3388030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
168-316
               

               
Cow position:
               
chr13:39775551-39775703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
168-323
               

               
Cow position:
               
chr13:6997085-6996934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
134, 56
               

               
Conread position:
               
168-328
               

               
Cow position:
               
chr13:55327373-55327215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
113, 25
               

               
Conread position:
               
169-369
               

               
Cow position:
               
chr13:8423336-8423136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
132, 190
               

               
Conread position:
               
169-402
               

               
Cow position:
               
chr13:242566-242317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
170-301
               

               
Cow position:
               
chr13:18929459-18929328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
171-330
               

               
Cow position:
               
chr13:8230084-8229924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
131, 59
               

               
Conread position:
               
171-352
               

               
Cow position:
               
chr13:24591526-24591345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
130, 53
               

               
Conread position:
               
173-329
               

               
Cow position:
               
chr13:9702387-9702229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
128, 150
               

               
Conread position:
               
174-304
               

               
Cow position:
               
chr13:21070935-21070804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
174-331
               

               
Cow position:
               
chr13:50545472-50545315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 50
               

               
Conread position:
               
176-331
               

               
Cow position:
               
chr13:45439455-45439304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
125, 56
               

               
Conread position:
               
176-334
               

               
Cow position:
               
chr13:16718428-16718586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
125, 143
               

               
Conread position:
               
181-331
               

               
Cow position:
               
chr13:9587662-9587810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
181-332
               

               
Cow position:
               
chr13:27146743-27146590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
187-304
               

               
Cow position:
               
chr13:56958894-56958776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
187-322
               

               
Cow position:
               
chr13:20820924-20821057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 52
               

               
Conread position:
               
187-324
               

               
Cow position:
               
chr13:43577904-43577766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
187-329
               

               
Cow position:
               
chr13:41474785-41474648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
115, 53
               

               
Conread position:
               
187-330
               

               
Cow position:
               
chr13:9612982-9612848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
114, 42
               

               
Conread position:
               
187-331
               

               
Cow position:
               
chr13:52929348-52929203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
194-317
               

               
Cow position:
               
chr13:30809467-30809589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
107, 48
               

               
Conread position:
               
195-329
               

               
Cow position:
               
chr13:1643978-1644112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
26, 109
               

               
Conread position:
               
199-306
               

               
Cow position:
               
chr13:18875037-18874929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
216-356
               

               
Cow position:
               
chr13:21182809-21182945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
86, 24
               

               
Conread position:
               
338-616
               

               
Cow position:
               
chr13:34378133-34377862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
65, 30
               
Show alignments to all cow chromosomes.