Cow genome map

Conread name: Ss1.1-Pig4-TMW8047J22.3

Conread position: 77-321
Cow position: chrX:46079074-46079321 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 38

Conread position: 103-336
Cow position: chrX:41790412-41790179 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 169
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 121, 14

Conread position: 108-281
Cow position: chrX:4515715-4515880 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 111, 20

Conread position: 108-331
Cow position: chrX:24331798-24332020 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 193, 9

Conread position: 108-331
Cow position: chrX:33000927-33001143 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 104, 9

Conread position: 108-352
Cow position: chrX:24425980-24425740 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 191, 9

Conread position: 108-358
Cow position: chrX:38321360-38321112 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 170
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 194, 9

Conread position: 109-249
Cow position: chrX:6278475-6278337 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 109-300
Cow position: chrX:34543807-34543997 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 169, 8

Conread position: 109-306
Cow position: chrX:34554746-34554942 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 192, 8

Conread position: 109-313
Cow position: chrX:3494799-3494596 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 192, 8

Conread position: 109-316
Cow position: chrX:37955870-37956073 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 192, 8

Conread position: 109-317
Cow position: chrX:27508999-27508795 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 121, 8

Conread position: 109-318
Cow position: chrX:19761777-19761979 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 186, 8

Conread position: 109-322
Cow position: chrX:28067873-28068085 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 192, 8

Conread position: 109-322
Cow position: chrX:33654821-33654609 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 192, 8

Conread position: 109-323
Cow position: chrX:870158-869947 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 146
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 193, 8

Conread position: 109-323
Cow position: chrX:9360910-9361118 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 121, 8

Conread position: 109-323
Cow position: chrX:38967911-38968131 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 121, 14

Conread position: 109-329
Cow position: chrX:3579967-3580186 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 192, 8

Conread position: 109-329
Cow position: chrX:7648387-7648172 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 110, 8

Conread position: 109-330
Cow position: chrX:4328160-4327938 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 186, 8

Conread position: 109-330
Cow position: chrX:4632835-4632612 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 43, 8

Conread position: 109-331
Cow position: chrX:8493089-8493312 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 206, 8

Conread position: 109-331
Cow position: chrX:15147170-15146957 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 192, 8

Conread position: 109-331
Cow position: chrX:44054825-44055046 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 192, 8

Conread position: 109-332
Cow position: chrX:12095751-12095527 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 17, 8

Conread position: 109-334
Cow position: chrX:25207832-25207616 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 164
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 172, 8

Conread position: 109-338
Cow position: chrX:23563768-23563539 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 158
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 191, 8

Conread position: 109-353
Cow position: chrX:46587845-46588086 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 174
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 192, 8

Conread position: 110-332
Cow position: chrX:35431213-35430998 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 191, 14

Conread position: 111-329
Cow position: chrX:44995523-44995745 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 57, 6

Conread position: 113-333
Cow position: chrX:6599756-6599530 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 138, 13

Conread position: 113-337
Cow position: chrX:17524358-17524135 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 164
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 188, 11

Conread position: 115-316
Cow position: chrX:48822315-48822114 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 186, 115

Conread position: 115-331
Cow position: chrX:15545910-15546125 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 162
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 186, 9

Conread position: 115-331
Cow position: chrX:31983557-31983335 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 157
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 120, 5

Conread position: 116-262
Cow position: chrX:28878145-28878001 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 116-300
Cow position: chrX:4279089-4278908 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 116-313
Cow position: chrX:29478753-29478947 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 185, 8

Conread position: 116-317
Cow position: chrX:46532466-46532261 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 149
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 116, 8

Conread position: 116-318
Cow position: chrX:4109213-4109415 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 185, 8

Conread position: 116-319
Cow position: chrX:31250417-31250621 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 165, 8

Conread position: 116-321
Cow position: chrX:3806711-3806912 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 152
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 185, 8

Conread position: 116-321
Cow position: chrX:38094487-38094293 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 185, 8

Conread position: 116-322
Cow position: chrX:24365792-24365588 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 185, 7

Conread position: 116-323
Cow position: chrX:24170700-24170490 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 117, 8

Conread position: 116-323
Cow position: chrX:27705615-27705822 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 157
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 165, 8

Conread position: 116-326
Cow position: chrX:16575141-16575346 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 116-326
Cow position: chrX:40680643-40680853 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 185, 8

Conread position: 116-327
Cow position: chrX:5872346-5872573 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 120, 8

Conread position: 116-327
Cow position: chrX:42855487-42855702 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 124, 8

Conread position: 116-328
Cow position: chrX:25037016-25037232 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 123, 7

Conread position: 116-328
Cow position: chrX:42247153-42246939 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 185, 7

Conread position: 116-329
Cow position: chrX:19018802-19018588 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 121, 8

Conread position: 116-330
Cow position: chrX:10829461-10829679 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 104, 7

Conread position: 116-331
Cow position: chrX:11633711-11633926 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 154
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 185, 8

Conread position: 116-331
Cow position: chrX:24104868-24105088 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 176, 8

Conread position: 116-331
Cow position: chrX:35285202-35285420 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 164
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 185, 7

Conread position: 116-331
Cow position: chrX:35392265-35392062 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 185, 7

Conread position: 116-331
Cow position: chrX:42449985-42449770 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 160
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 185, 8

Conread position: 116-331
Cow position: chrX:44192418-44192197 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 50, 7

Conread position: 116-333
Cow position: chrX:2314590-2314371 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 186, 8

Conread position: 116-333
Cow position: chrX:41941652-41941868 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 161
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 185, 8

Conread position: 116-335
Cow position: chrX:21327940-21328159 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 6, 19

Conread position: 116-340
Cow position: chrX:14955740-14955512 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 7

Conread position: 116-341
Cow position: chrX:46909844-46910063 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 168
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 185, 8

Conread position: 116-344
Cow position: chrX:27261220-27261445 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 41, 8

Conread position: 116-348
Cow position: chrX:19902242-19902005 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 156
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 94, 7

Conread position: 116-395
Cow position: chrX:7351329-7351601 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 115, 8

Conread position: 117-307
Cow position: chrX:36922114-36921922 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 5, 148

Conread position: 117-312
Cow position: chrX:11653798-11653991 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 124

Conread position: 117-316
Cow position: chrX:36283370-36283568 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 150
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 184, 7

Conread position: 117-321
Cow position: chrX:47601293-47601090 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 5, 17

Conread position: 117-323
Cow position: chrX:20339862-20339660 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 184, 7

Conread position: 117-327
Cow position: chrX:8642074-8642284 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 5, 61

Conread position: 117-333
Cow position: chrX:4091954-4092167 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 184, 7

Conread position: 117-341
Cow position: chrX:37749953-37749741 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 7, 0

Conread position: 119-330
Cow position: chrX:13177445-13177243 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 155
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 182, 110

Conread position: 120-331
Cow position: chrX:4403351-4403561 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 13

Conread position: 121-322
Cow position: chrX:40320439-40320642 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 140
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 180, 0

Conread position: 121-323
Cow position: chrX:11844208-11844001 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 171, 0

Conread position: 121-330
Cow position: chrX:13147014-13147221 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 122-332
Cow position: chrX:42875247-42875454 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 156
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 179, 8

Conread position: 123-315
Cow position: chrX:876807-876620 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 178, 42

Conread position: 123-316
Cow position: chrX:30337919-30337726 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 101, 31

Conread position: 123-319
Cow position: chrX:20583701-20583891 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 178, 116

Conread position: 123-319
Cow position: chrX:26493041-26493238 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 176, 0

Conread position: 123-319
Cow position: chrX:29544842-29544654 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 178, 109

Conread position: 123-320
Cow position: chrX:38218749-38218946 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 71, 113

Conread position: 123-323
Cow position: chrX:6407579-6407779 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 178, 41

Conread position: 123-324
Cow position: chrX:34502955-34503163 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 107, 185

Conread position: 123-328
Cow position: chrX:25035347-25035141 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 146
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 178, 0

Conread position: 123-330
Cow position: chrX:20887606-20887407 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 96, 118

Conread position: 123-330
Cow position: chrX:32420247-32420452 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 178, 101

Conread position: 123-331
Cow position: chrX:25815866-25815656 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 115, 84

Conread position: 123-331
Cow position: chrX:27431883-27431681 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 144
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 178, 116

Conread position: 123-331
Cow position: chrX:34411881-34412094 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 133, 0

Conread position: 123-331
Cow position: chrX:36975986-36976192 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 152
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 179, 0

Conread position: 123-332
Cow position: chrX:31729477-31729683 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 178, 116

Conread position: 123-333
Cow position: chrX:5919527-5919731 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 62, 111

Conread position: 123-333
Cow position: chrX:8869367-8869159 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 100, 121

Conread position: 123-333
Cow position: chrX:43008644-43008856 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 178, 199

Conread position: 123-338
Cow position: chrX:20345486-20345704 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 156
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 181, 6

Conread position: 123-345
Cow position: chrX:31948900-31948676 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 172, 0

Conread position: 123-439
Cow position: chrX:28940277-28940600 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 221
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 115

Conread position: 124-251
Cow position: chrX:37129305-37129432 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 124-300
Cow position: chrX:13868738-13868915 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 101

Conread position: 124-307
Cow position: chrX:4645877-4645695 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 177, 100

Conread position: 124-307
Cow position: chrX:35681604-35681786 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 177, 5

Conread position: 124-311
Cow position: chrX:42836217-42836405 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 177, 101

Conread position: 124-312
Cow position: chrX:27075015-27074827 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 121, 100

Conread position: 124-312
Cow position: chrX:38301845-38302038 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 121, 0

Conread position: 124-313
Cow position: chrX:10516289-10516479 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 177, 0

Conread position: 124-315
Cow position: chrX:20168594-20168782 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 177, 96

Conread position: 124-315
Cow position: chrX:32910140-32910324 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 177, 57

Conread position: 124-319
Cow position: chrX:12219181-12219377 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 178, 0

Conread position: 124-319
Cow position: chrX:27416132-27416326 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 111, 8

Conread position: 124-322
Cow position: chrX:34398748-34398550 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 177, 195

Conread position: 124-322
Cow position: chrX:35276021-35276220 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 177, 0

Conread position: 124-323
Cow position: chrX:17498358-17498558 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 177, 0

Conread position: 124-323
Cow position: chrX:26979753-26979556 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 149
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 94, 47

Conread position: 124-323
Cow position: chrX:43152120-43151916 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 168, 0

Conread position: 124-323
Cow position: chrX:45254547-45254347 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 178, 0

Conread position: 124-323
Cow position: chrX:46793710-46793515 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 177, 101

Conread position: 124-323
Cow position: chrX:48003882-48004081 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 137
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 177, 86

Conread position: 124-323
Cow position: chrX:48071197-48071397 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 178, 0

Conread position: 124-325
Cow position: chrX:31294536-31294336 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 108, 178

Conread position: 124-326
Cow position: chrX:24336041-24335838 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 171, 0

Conread position: 124-327
Cow position: chrX:32574353-32574554 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 175, 131

Conread position: 124-330
Cow position: chrX:34420770-34420977 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 114, 123

Conread position: 124-331
Cow position: chrX:12290755-12290961 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 155
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 177, 118

Conread position: 124-331
Cow position: chrX:17949457-17949248 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 178, 0

Conread position: 124-331
Cow position: chrX:27446722-27446925 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 177, 132

Conread position: 124-331
Cow position: chrX:36109580-36109370 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 117, 0

Conread position: 124-333
Cow position: chrX:17231771-17231985 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 0

Conread position: 124-333
Cow position: chrX:18439032-18439242 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 178, 0

Conread position: 124-333
Cow position: chrX:29601792-29601581 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 173, 110

Conread position: 124-333
Cow position: chrX:30962841-30962629 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 95, 0

Conread position: 124-334
Cow position: chrX:34441418-34441207 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 177, 0

Conread position: 124-334
Cow position: chrX:42050234-42050022 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 141
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 178, 0

Conread position: 124-336
Cow position: chrX:26205412-26205210 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 147
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 106, 0

Conread position: 124-338
Cow position: chrX:35885691-35885482 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 157
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 177, 115

Conread position: 124-340
Cow position: chrX:1719151-1719355 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 177, 115

Conread position: 124-363
Cow position: chrX:25049246-25049000 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 164
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 177, 0

Conread position: 124-393
Cow position: chrX:34222752-34223013 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 179
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 212, 57

Conread position: 125-304
Cow position: chrX:31986537-31986356 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 101

Conread position: 125-312
Cow position: chrX:39220116-39220312 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 125-321
Cow position: chrX:16556180-16555990 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 176, 65

Conread position: 126-308
Cow position: chrX:31436512-31436689 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 175, 109

Conread position: 126-312
Cow position: chrX:8326942-8327129 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 175, 0

Conread position: 126-312
Cow position: chrX:17795019-17795203 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 104, 0

Conread position: 126-316
Cow position: chrX:38549486-38549675 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 175, 7

Conread position: 126-319
Cow position: chrX:9252125-9251932 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 84, 118

Conread position: 126-319
Cow position: chrX:22115279-22115083 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 138
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 106, 0

Conread position: 126-319
Cow position: chrX:27668920-27668731 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 175, 114

Conread position: 126-321
Cow position: chrX:40826713-40826517 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 133
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 175, 0

Conread position: 126-322
Cow position: chrX:37072427-37072622 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 175, 114

Conread position: 126-323
Cow position: chrX:12979796-12979600 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 143
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 175, 116

Conread position: 126-323
Cow position: chrX:34314062-34314256 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 175, 114

Conread position: 126-328
Cow position: chrX:16984679-16984875 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 175, 80

Conread position: 126-328
Cow position: chrX:32866913-32867110 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 178, 114

Conread position: 126-329
Cow position: chrX:34837026-34836833 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 175, 103

Conread position: 126-329
Cow position: chrX:42927786-42927589 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 175, 114

Conread position: 126-330
Cow position: chrX:1466200-1466407 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 84, 115

Conread position: 126-330
Cow position: chrX:27145642-27145844 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 151
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 176, 109

Conread position: 126-331
Cow position: chrX:16412241-16412038 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 6

Conread position: 126-331
Cow position: chrX:29467740-29467537 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 147
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 175, 106

Conread position: 126-331
Cow position: chrX:41027197-41027405 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 175, 0

Conread position: 126-331
Cow position: chrX:41435511-41435300 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 112, 195

Conread position: 126-331
Cow position: chrX:47155631-47155418 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 146
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 90, 201

Conread position: 126-332
Cow position: chrX:23359073-23358873 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 150
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 175, 28

Conread position: 126-333
Cow position: chrX:11656119-11656324 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 175, 114

Conread position: 126-333
Cow position: chrX:39290397-39290599 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 154, 88

Conread position: 126-333
Cow position: chrX:45976964-45977169 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 84, 98

Conread position: 126-334
Cow position: chrX:20957276-20957484 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 196, 176

Conread position: 126-336
Cow position: chrX:5026294-5026499 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 145
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 157, 102

Conread position: 126-337
Cow position: chrX:34991402-34991612 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 175, 118

Conread position: 126-338
Cow position: chrX:10415215-10415002 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 146
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 175, 0

Conread position: 126-338
Cow position: chrX:47345365-47345577 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 77, 98

Conread position: 126-343
Cow position: chrX:29050288-29050495 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 163
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 83, 23

Conread position: 126-353
Cow position: chrX:1088102-1087879 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 161
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 175, 28

Conread position: 126-353
Cow position: chrX:27270413-27270636 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 62, 115

Conread position: 126-353
Cow position: chrX:34565324-34565553 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 163
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 106, 43

Conread position: 126-363
Cow position: chrX:11454224-11454451 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 173, 55

Conread position: 126-405
Cow position: chrX:44123293-44123571 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 165
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 175, 114

Conread position: 127-321
Cow position: chrX:48495036-48495231 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 134
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 116, 23

Conread position: 127-323
Cow position: chrX:31250856-31250659 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 174, 0

Conread position: 127-325
Cow position: chrX:9201587-9201780 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 154, 107

Conread position: 127-326
Cow position: chrX:38853237-38853447 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 95, 32

Conread position: 127-333
Cow position: chrX:34532559-34532757 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 145
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 173, 93

Conread position: 127-340
Cow position: chrX:2935996-2936205 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 150
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 174, 97

Conread position: 127-352
Cow position: chrX:32943037-32942815 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 174, 155

Conread position: 128-314
Cow position: chrX:41858842-41858658 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 115

Conread position: 128-317
Cow position: chrX:42381072-42380883 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 112, 155

Conread position: 128-327
Cow position: chrX:36367895-36367695 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 173, 0

Conread position: 128-327
Cow position: chrX:39180193-39179994 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 148
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 153, 63

Conread position: 128-328
Cow position: chrX:33855179-33854985 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 173, 55

Conread position: 128-331
Cow position: chrX:35409792-35409996 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 173, 62

Conread position: 128-393
Cow position: chrX:42893966-42894230 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 188
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 173, 102

Conread position: 130-319
Cow position: chrX:23471824-23471637 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 100, 113

Conread position: 130-328
Cow position: chrX:24749130-24749326 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 128, 24

Conread position: 131-279
Cow position: chrX:31252451-31252598 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 133-322
Cow position: chrX:38935324-38935515 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 162, 68

Conread position: 133-333
Cow position: chrX:46068714-46068518 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 182, 99

Conread position: 133-337
Cow position: chrX:41453347-41453548 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 168, 109

Conread position: 134-329
Cow position: chrX:34505003-34504813 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 148
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 72

Conread position: 139-315
Cow position: chrX:755975-756147 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 162, 22

Conread position: 139-323
Cow position: chrX:34376993-34377174 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 162, 101

Conread position: 140-319
Cow position: chrX:25846021-25845842 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 162, 82

Conread position: 140-321
Cow position: chrX:17293007-17293189 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 162, 0

Conread position: 140-323
Cow position: chrX:18030365-18030181 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 127
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 162, 0

Conread position: 140-323
Cow position: chrX:18111430-18111614 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 161, 0

Conread position: 140-323
Cow position: chrX:21642430-21642246 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 125
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 160, 0

Conread position: 140-323
Cow position: chrX:37752054-37751876 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 161, 90

Conread position: 140-331
Cow position: chrX:19000178-19000370 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 161, 0

Conread position: 140-333
Cow position: chrX:27442487-27442293 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 161, 0

Conread position: 140-335
Cow position: chrX:37867305-37867504 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 161, 0

Conread position: 140-340
Cow position: chrX:5118446-5118246 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 161, 82

Conread position: 140-348
Cow position: chrX:46546823-46546614 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 147, 184

Conread position: 141-330
Cow position: chrX:11529395-11529580 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 95

Conread position: 141-331
Cow position: chrX:48473960-48474150 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 96, 160

Conread position: 144-300
Cow position: chrX:3507623-3507775 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 144-320
Cow position: chrX:6480540-6480363 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 156, 0

Conread position: 150-327
Cow position: chrX:5097737-5097555 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 22, 92

Conread position: 150-329
Cow position: chrX:30789469-30789288 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 135
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 73, 0

Conread position: 151-314
Cow position: chrX:48574294-48574128 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 81, 0

Conread position: 151-316
Cow position: chrX:28850786-28850941 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 152-332
Cow position: chrX:36260744-36260925 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 79, 68

Conread position: 153-279
Cow position: chrX:40283186-40283313 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 0

Conread position: 153-304
Cow position: chrX:11813138-11813290 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 148, 0

Conread position: 153-315
Cow position: chrX:38577710-38577871 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 128, 71

Conread position: 153-316
Cow position: chrX:296456-296620 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 148, 0

Conread position: 153-316
Cow position: chrX:6634409-6634573 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 148, 0

Conread position: 153-316
Cow position: chrX:25827070-25826911 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 128, 48

Conread position: 153-319
Cow position: chrX:4602873-4602707 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 148, 16

Conread position: 153-319
Cow position: chrX:41215387-41215554 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 148, 0

Conread position: 153-331
Cow position: chrX:14951288-14951110 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 148, 70

Conread position: 153-343
Cow position: chrX:16770129-16770322 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 148, 0

Conread position: 154-323
Cow position: chrX:10154981-10154813 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 27

Conread position: 155-343
Cow position: chrX:11589300-11589113 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 146, 98

Conread position: 156-298
Cow position: chrX:46022842-46022984 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 103
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 156-304
Cow position: chrX:10237845-10237697 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 143, 66

Conread position: 156-311
Cow position: chrX:45759739-45759892 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 115, 84

Conread position: 156-314
Cow position: chrX:22552911-22552753 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 145, 131

Conread position: 156-316
Cow position: chrX:9451413-9451569 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 87, 41

Conread position: 156-316
Cow position: chrX:42432440-42432284 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 146, 10

Conread position: 156-318
Cow position: chrX:24633763-24633916 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 145, 87

Conread position: 156-318
Cow position: chrX:42086895-42087056 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 145, 126

Conread position: 156-320
Cow position: chrX:40648963-40649135 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 156-320
Cow position: chrX:44201978-44201813 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 139, 0

Conread position: 156-321
Cow position: chrX:42760320-42760486 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 145, 0

Conread position: 156-321
Cow position: chrX:44040244-44040410 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 145, 0

Conread position: 156-322
Cow position: chrX:1960357-1960191 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 145, 92

Conread position: 156-322
Cow position: chrX:23497623-23497463 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 145, 57

Conread position: 156-322
Cow position: chrX:35268929-35269090 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 110, 84

Conread position: 156-322
Cow position: chrX:37542470-37542305 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 146, 68

Conread position: 156-322
Cow position: chrX:45391646-45391479 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 143, 0

Conread position: 156-323
Cow position: chrX:32330234-32330406 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 156-323
Cow position: chrX:40035372-40035207 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 146, 0

Conread position: 156-323
Cow position: chrX:41878866-41878702 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 145, 110

Conread position: 156-323
Cow position: chrX:43115218-43115385 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 145, 85

Conread position: 156-324
Cow position: chrX:5915256-5915430 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 0

Conread position: 156-324
Cow position: chrX:42492455-42492284 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 52

Conread position: 156-324
Cow position: chrX:46533237-46533068 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 139, 0

Conread position: 156-328
Cow position: chrX:14135746-14135916 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 146, 84

Conread position: 156-328
Cow position: chrX:27175066-27175240 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 122, 0

Conread position: 156-328
Cow position: chrX:43150499-43150672 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 145, 57

Conread position: 156-329
Cow position: chrX:4169963-4169792 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 122, 66

Conread position: 156-329
Cow position: chrX:14925340-14925514 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 140, 0

Conread position: 156-329
Cow position: chrX:15100051-15100221 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 84

Conread position: 156-329
Cow position: chrX:26882012-26881838 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 134
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 145, 0

Conread position: 156-329
Cow position: chrX:34238787-34238962 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 149

Conread position: 156-329
Cow position: chrX:39642554-39642387 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 145, 34

Conread position: 156-329
Cow position: chrX:45044520-45044695 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 74, 130

Conread position: 156-331
Cow position: chrX:1938082-1938256 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 145, 75

Conread position: 156-331
Cow position: chrX:2674890-2674715 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 156-331
Cow position: chrX:3032975-3032799 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 124
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 131, 166

Conread position: 156-331
Cow position: chrX:4559801-4559977 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 145, 0

Conread position: 156-331
Cow position: chrX:23335908-23335732 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 145, 0

Conread position: 156-331
Cow position: chrX:35985886-35986058 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 79, 57

Conread position: 156-331
Cow position: chrX:41010966-41011133 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 145, 66

Conread position: 156-331
Cow position: chrX:41199292-41199465 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 84

Conread position: 156-331
Cow position: chrX:44225663-44225485 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 145, 0

Conread position: 156-332
Cow position: chrX:6389149-6389326 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 145, 29

Conread position: 156-332
Cow position: chrX:33466692-33466866 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 102, 68

Conread position: 156-332
Cow position: chrX:44339257-44339077 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 95, 133

Conread position: 156-333
Cow position: chrX:1101625-1101796 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 145, 57

Conread position: 156-333
Cow position: chrX:40556391-40556217 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 79

Conread position: 156-336
Cow position: chrX:12818-12994 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 145, 31

Conread position: 156-336
Cow position: chrX:18204395-18204218 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 109, 87

Conread position: 156-340
Cow position: chrX:17525799-17525625 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 136
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 145, 78

Conread position: 156-340
Cow position: chrX:45139864-45139675 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 146, 0

Conread position: 156-351
Cow position: chrX:19717588-19717777 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 145, 58

Conread position: 157-290
Cow position: chrX:44660521-44660387 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 50, 0

Conread position: 157-312
Cow position: chrX:1122478-1122323 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 145, 135

Conread position: 157-314
Cow position: chrX:28106916-28107072 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 143, 86

Conread position: 157-315
Cow position: chrX:41166756-41166602 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 144, 56

Conread position: 157-323
Cow position: chrX:37867501-37867668 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 144, 0

Conread position: 157-324
Cow position: chrX:36468300-36468133 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 157-328
Cow position: chrX:47013334-47013161 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 106, 0

Conread position: 157-329
Cow position: chrX:11674178-11674353 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 157-331
Cow position: chrX:4268995-4268828 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 144, 63

Conread position: 157-387
Cow position: chrX:16836221-16835995 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 78

Conread position: 158-307
Cow position: chrX:13347343-13347488 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 143, 26

Conread position: 158-315
Cow position: chrX:33678403-33678243 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 54, 0

Conread position: 158-325
Cow position: chrX:3494975-3494813 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 141, 19

Conread position: 158-331
Cow position: chrX:32215298-32215473 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 123, 127

Conread position: 158-332
Cow position: chrX:47100527-47100350 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 88, 66

Conread position: 158-333
Cow position: chrX:16763855-16763684 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 143, 82

Conread position: 158-333
Cow position: chrX:34270631-34270803 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 143, 101

Conread position: 158-343
Cow position: chrX:51831-51648 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 142
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 143, 73

Conread position: 158-354
Cow position: chrX:10278940-10279142 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 68, 134

Conread position: 159-319
Cow position: chrX:10252129-10251971 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 143, 71

Conread position: 159-324
Cow position: chrX:26881494-26881326 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 59, 116

Conread position: 159-328
Cow position: chrX:35658867-35659034 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 142, 127

Conread position: 159-330
Cow position: chrX:19394624-19394797 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 51, 76

Conread position: 159-336
Cow position: chrX:38346992-38347169 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 100
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 159-339
Cow position: chrX:41454883-41454703 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 142
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 122, 127

Conread position: 159-389
Cow position: chrX:47855052-47855274 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 142, 24

Conread position: 160-292
Cow position: chrX:13647713-13647581 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 160-300
Cow position: chrX:8731165-8731305 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 160-323
Cow position: chrX:45657868-45657700 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 80, 0

Conread position: 160-339
Cow position: chrX:34194009-34193826 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 141, 0

Conread position: 161-315
Cow position: chrX:13923937-13924088 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 140, 79

Conread position: 163-300
Cow position: chrX:25049026-25048891 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 92, 0

Conread position: 163-305
Cow position: chrX:45448983-45449127 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 163-317
Cow position: chrX:3542931-3543094 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 77, 0

Conread position: 163-317
Cow position: chrX:22283912-22284068 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 163-317
Cow position: chrX:31480043-31480195 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 78

Conread position: 163-318
Cow position: chrX:35029851-35029706 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 163-322
Cow position: chrX:231943-231792 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 139, 77

Conread position: 163-327
Cow position: chrX:43059176-43059016 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 122
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 139, 65

Conread position: 163-331
Cow position: chrX:42506874-42506704 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 159

Conread position: 163-336
Cow position: chrX:4486949-4486775 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 138, 70

Conread position: 163-339
Cow position: chrX:1571514-1571347 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 138, 69

Conread position: 164-300
Cow position: chrX:44702990-44702854 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 164-315
Cow position: chrX:15139422-15139269 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 164-321
Cow position: chrX:34108282-34108125 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 132, 108

Conread position: 164-323
Cow position: chrX:4750256-4750103 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 137, 60

Conread position: 164-323
Cow position: chrX:11670762-11670922 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 137, 0

Conread position: 164-329
Cow position: chrX:11517904-11517738 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 72, 156

Conread position: 164-332
Cow position: chrX:30958806-30958971 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 137, 110

Conread position: 164-333
Cow position: chrX:30672314-30672140 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 75, 161

Conread position: 164-333
Cow position: chrX:31489596-31489765 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 137, 162

Conread position: 166-320
Cow position: chrX:28167057-28167211 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 134, 68

Conread position: 166-328
Cow position: chrX:5134553-5134714 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 93, 20

Conread position: 166-330
Cow position: chrX:8759699-8759865 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 40, 0

Conread position: 166-330
Cow position: chrX:11602407-11602246 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 135, 120

Conread position: 166-331
Cow position: chrX:37717800-37717964 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 135, 16

Conread position: 168-328
Cow position: chrX:19356543-19356705 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 133, 0

Conread position: 169-327
Cow position: chrX:17929082-17929237 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 132, 67

Conread position: 169-330
Cow position: chrX:35509598-35509438 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 132, 70

Conread position: 169-330
Cow position: chrX:42516049-42515887 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 132, 0

Conread position: 169-342
Cow position: chrX:42314811-42314637 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 124
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 132, 0

Conread position: 171-318
Cow position: chrX:31279841-31279697 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 128, 71

Conread position: 172-331
Cow position: chrX:37176958-37177110 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 129, 70

Conread position: 174-327
Cow position: chrX:1996366-1996212 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 127
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 127, 0

Conread position: 180-317
Cow position: chrX:26367611-26367471 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 121, 0

Conread position: 180-333
Cow position: chrX:42165522-42165374 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 121, 53

Conread position: 181-316
Cow position: chrX:39887121-39886984 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 181-327
Cow position: chrX:10479842-10479988 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 120, 138

Conread position: 183-331
Cow position: chrX:36962845-36962993 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 42

Conread position: 187-314
Cow position: chrX:6559358-6559230 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 114, 0

Conread position: 187-316
Cow position: chrX:4399218-4399346 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 34

Conread position: 187-317
Cow position: chrX:42159040-42159171 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 98

Conread position: 187-336
Cow position: chrX:597380-597232 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 113, 132

Conread position: 190-329
Cow position: chrX:5063340-5063479 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 107, 39

Conread position: 190-330
Cow position: chrX:783546-783689 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 190-337
Cow position: chrX:41194007-41194157 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 105, 16

Conread position: 193-333
Cow position: chrX:29723856-29723996 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 108, 17

Conread position: 194-327
Cow position: chrX:38727032-38726905 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 107, 45

Conread position: 194-329
Cow position: chrX:6855965-6856101 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 107, 0

Conread position: 195-333
Cow position: chrX:42220595-42220457 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 106, 120

Conread position: 203-319
Cow position: chrX:19162016-19161899 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 204-333
Cow position: chrX:23185222-23185091 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 97, 0

Conread position: 204-393
Cow position: chrX:38080263-38080454 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 97, 169

Conread position: 206-329
Cow position: chrX:32590288-32590164 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 215-329
Cow position: chrX:3130770-3130885 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 9

Show alignments to all cow chromosomes.