Cow genome map

Conread name: Ss1.1-Pig4-TMW8047O02.5

Conread position: 1-88
Cow position:
Alignm length: 88
Alignm identity: 77
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position:
Alignm length: 88
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position:
Alignm length: 88
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position:
Alignm length: 88
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 83-607
Cow position:
Alignm length: 538
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 194

Conread position: 84-466
Cow position:
Alignm length: 394
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 5

Conread position: 84-607
Cow position:
Alignm length: 537
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 5

Conread position: 84-607
Cow position:
Alignm length: 529
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 5

Conread position: 84-607
Cow position:
Alignm length: 530
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 161

Conread position: 87-607
Cow position:
Alignm length: 543
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 33

Conread position: 89-501
Cow position:
Alignm length: 418
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 26

Conread position: 90-607
Cow position:
Alignm length: 532
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 156

Conread position: 91-347
Cow position:
Alignm length: 263
Alignm identity: 176
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 9, 0

Conread position: 91-448
Cow position:
Alignm length: 364
Alignm identity: 246
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 49, 140

Conread position: 91-470
Cow position:
Alignm length: 386
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 8

Conread position: 91-517
Cow position:
Alignm length: 443
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 71

Conread position: 91-549
Cow position:
Alignm length: 468
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 279

Conread position: 91-605
Cow position:
Alignm length: 527
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 91-605
Cow position:
Alignm length: 519
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 92

Conread position: 91-607
Cow position:
Alignm length: 524
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 99

Conread position: 91-607
Cow position:
Alignm length: 530
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 60

Conread position: 91-607
Cow position:
Alignm length: 528
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 263

Conread position: 91-607
Cow position:
Alignm length: 535
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 320

Conread position: 91-611
Cow position:
Alignm length: 528
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 33

Conread position: 92-527
Cow position:
Alignm length: 446
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 69

Conread position: 92-605
Cow position:
Alignm length: 527
Alignm identity: 339
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 40, 19

Conread position: 92-607
Cow position:
Alignm length: 529
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 7

Conread position: 93-312
Cow position:
Alignm length: 231
Alignm identity: 176
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 9, 102

Conread position: 93-522
Cow position:
Alignm length: 435
Alignm identity: 296
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 25, 11

Conread position: 93-578
Cow position:
Alignm length: 501
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 261

Conread position: 93-584
Cow position:
Alignm length: 503
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 214

Conread position: 93-607
Cow position:
Alignm length: 521
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 30

Conread position: 93-607
Cow position:
Alignm length: 522
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 70

Conread position: 94-308
Cow position:
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 21, 92

Conread position: 94-602
Cow position:
Alignm length: 512
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 10

Conread position: 94-605
Cow position:
Alignm length: 517
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 96

Conread position: 94-607
Cow position:
Alignm length: 524
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 224

Conread position: 94-607
Cow position:
Alignm length: 533
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 93

Conread position: 94-607
Cow position:
Alignm length: 525
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 96

Conread position: 94-607
Cow position:
Alignm length: 518
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 258

Conread position: 94-607
Cow position:
Alignm length: 527
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 98

Conread position: 94-607
Cow position:
Alignm length: 526
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 303

Conread position: 94-607
Cow position:
Alignm length: 525
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 96

Conread position: 94-608
Cow position:
Alignm length: 528
Alignm identity: 324
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 47, 29

Conread position: 95-345
Cow position:
Alignm length: 254
Alignm identity: 177
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 36, 0

Conread position: 95-366
Cow position:
Alignm length: 276
Alignm identity: 189
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 36, 100

Conread position: 95-446
Cow position:
Alignm length: 362
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 301

Conread position: 95-605
Cow position:
Alignm length: 522
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 306

Conread position: 95-607
Cow position:
Alignm length: 520
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 295

Conread position: 95-607
Cow position:
Alignm length: 522
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 165

Conread position: 95-607
Cow position:
Alignm length: 524
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 181

Conread position: 95-607
Cow position:
Alignm length: 522
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 179

Conread position: 95-607
Cow position:
Alignm length: 524
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 165

Conread position: 95-607
Cow position:
Alignm length: 524
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 306

Conread position: 95-607
Cow position:
Alignm length: 526
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 31

Conread position: 95-607
Cow position:
Alignm length: 527
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 150

Conread position: 95-607
Cow position:
Alignm length: 519
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 258

Conread position: 96-605
Cow position:
Alignm length: 538
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 14

Conread position: 96-607
Cow position:
Alignm length: 521
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 26

Conread position: 96-607
Cow position:
Alignm length: 526
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 310

Conread position: 97-583
Cow position:
Alignm length: 495
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 89

Conread position: 97-607
Cow position:
Alignm length: 527
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 90

Conread position: 98-387
Cow position:
Alignm length: 293
Alignm identity: 201
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 17, 97

Conread position: 98-602
Cow position:
Alignm length: 514
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 268

Conread position: 98-607
Cow position:
Alignm length: 521
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 94

Conread position: 98-607
Cow position:
Alignm length: 516
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 35

Conread position: 99-255
Cow position:
Alignm length: 161
Alignm identity: 118
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 99-607
Cow position:
Alignm length: 520
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 121

Conread position: 100-358
Cow position:
Alignm length: 260
Alignm identity: 185
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 83

Conread position: 104-607
Cow position:
Alignm length: 513
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 18

Conread position: 104-607
Cow position:
Alignm length: 515
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 297

Conread position: 106-356
Cow position:
Alignm length: 256
Alignm identity: 181
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 91

Conread position: 106-608
Cow position:
Alignm length: 517
Alignm identity: 324
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 57

Conread position: 111-601
Cow position:
Alignm length: 505
Alignm identity: 332
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 95

Conread position: 113-608
Cow position:
Alignm length: 508
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 74

Conread position: 115-593
Cow position:
Alignm length: 494
Alignm identity: 326
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 22, 100

Conread position: 131-607
Cow position:
Alignm length: 484
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 187

Conread position: 135-604
Cow position:
Alignm length: 492
Alignm identity: 307
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 7, 64

Conread position: 138-608
Cow position:
Alignm length: 472
Alignm identity: 310
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 323, 30

Conread position: 141-601
Cow position:
Alignm length: 477
Alignm identity: 314
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 145, 66

Conread position: 141-607
Cow position:
Alignm length: 476
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 125

Conread position: 159-365
Cow position:
Alignm length: 212
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 61, 31

Conread position: 159-593
Cow position:
Alignm length: 446
Alignm identity: 293
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 63, 25

Conread position: 162-447
Cow position:
Alignm length: 289
Alignm identity: 203
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 131, 221

Conread position: 171-525
Cow position:
Alignm length: 360
Alignm identity: 248
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 5

Conread position: 181-605
Cow position:
Alignm length: 434
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 207

Conread position: 185-607
Cow position:
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 198

Conread position: 185-608
Cow position:
Alignm length: 441
Alignm identity: 279
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 103, 135

Conread position: 189-522
Cow position:
Alignm length: 339
Alignm identity: 222
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 41, 178

Conread position: 190-585
Cow position:
Alignm length: 408
Alignm identity: 261
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 161

Conread position: 192-607
Cow position:
Alignm length: 439
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 336

Conread position: 197-607
Cow position:
Alignm length: 413
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 65

Conread position: 210-607
Cow position:
Alignm length: 411
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 193

Conread position: 211-468
Cow position:
Alignm length: 262
Alignm identity: 193
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 82, 133

Conread position: 213-604
Cow position:
Alignm length: 404
Alignm identity: 275
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 231, 97

Conread position: 223-509
Cow position:
Alignm length: 292
Alignm identity: 205
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 64, 48

Conread position: 223-607
Cow position:
Alignm length: 388
Alignm identity: 268
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 70, 10

Conread position: 228-374
Cow position:
Alignm length: 147
Alignm identity: 117
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 231-607
Cow position:
Alignm length: 387
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 169

Conread position: 232-548
Cow position:
Alignm length: 329
Alignm identity: 219
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 59, 90

Conread position: 238-607
Cow position:
Alignm length: 379
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 166

Conread position: 264-607
Cow position:
Alignm length: 353
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 135

Conread position: 278-607
Cow position:
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 121

Conread position: 280-601
Cow position:
Alignm length: 330
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 117

Conread position: 294-607
Cow position:
Alignm length: 319
Alignm identity: 227
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 74, 102

Conread position: 330-522
Cow position:
Alignm length: 200
Alignm identity: 139
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 32, 61

Conread position: 334-605
Cow position:
Alignm length: 275
Alignm identity: 184
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 125, 49

Conread position: 344-589
Cow position:
Alignm length: 248
Alignm identity: 183
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 73, 24

Conread position: 346-607
Cow position:
Alignm length: 263
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 46

Conread position: 353-605
Cow position:
Alignm length: 256
Alignm identity: 181
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 107, 50

Conread position: 358-578
Cow position:
Alignm length: 223
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 34

Conread position: 358-599
Cow position:
Alignm length: 255
Alignm identity: 183
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 50, 33

Conread position: 358-607
Cow position:
Alignm length: 252
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 34

Conread position: 360-608
Cow position:
Alignm length: 253
Alignm identity: 172
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 18, 34

Conread position: 362-573
Cow position:
Alignm length: 213
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 29

Conread position: 387-607
Cow position:
Alignm length: 227
Alignm identity: 173
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 24, 181

Conread position: 436-607
Cow position:
Alignm length: 173
Alignm identity: 146
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 25, 58

Conread position: 445-607
Cow position:
Alignm length: 165
Alignm identity: 125
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 16, 53

Conread position: 447-597
Cow position:
Alignm length: 152
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 447-600
Cow position:
Alignm length: 155
Alignm identity: 123
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 13, 0

Conread position: 486-607
Cow position:
Alignm length: 122
Alignm identity: 98
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.