Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047O02.5 |
| Conread position: | 1-88 |
| Cow position: | chr12:3717982-3718069 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr12:14213879-14213966 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr12:15775696-15775609 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr12:30686036-30685949 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr12:33926231-33926318 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-607 |
| Cow position: | chr12:3360586-3361115 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 79-544 |
| Cow position: | chr12:26141487-26141962 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 323 |
| Conread position: | 80-607 |
| Cow position: | chr12:20998440-20997922 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 44 |
| Conread position: | 80-607 |
| Cow position: | chr12:45261292-45261834 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 81-570 |
| Cow position: | chr12:21207374-21207868 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 5 |
| Conread position: | 84-607 |
| Cow position: | chr12:43031703-43031174 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 89-389 |
| Cow position: | chr12:1868151-1868449 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 23, 83 |
| Conread position: | 91-607 |
| Cow position: | chr12:21426382-21426905 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 99 |
| Conread position: | 91-607 |
| Cow position: | chr12:27933262-27932734 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 312 |
| Conread position: | 92-601 |
| Cow position: | chr12:22332309-22332829 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 92-607 |
| Cow position: | chr12:1402180-1402702 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 107 |
| Conread position: | 92-607 |
| Cow position: | chr12:25101373-25100850 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 94-354 |
| Cow position: | chr12:21197522-21197779 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 94-366 |
| Cow position: | chr12:48404738-48405008 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 94-604 |
| Cow position: | chr12:1137285-1137781 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 63 |
| Conread position: | 94-607 |
| Cow position: | chr12:21254967-21254445 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 301 |
| Conread position: | 94-607 |
| Cow position: | chr12:21901641-21902150 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 10 |
| Conread position: | 94-607 |
| Cow position: | chr12:21941467-21941976 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 94 |
| Conread position: | 94-607 |
| Cow position: | chr12:32653236-32653755 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 94-607 |
| Cow position: | chr12:37558248-37558767 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 95-381 |
| Cow position: | chr12:22026447-22026733 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 95-605 |
| Cow position: | chr12:22206055-22205538 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 67 |
| Conread position: | 95-607 |
| Cow position: | chr12:2282236-2282757 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 95-607 |
| Cow position: | chr12:6406957-6406440 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 95-607 |
| Cow position: | chr12:42860125-42859616 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 96-607 |
| Cow position: | chr12:252371-251847 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 174 |
| Conread position: | 96-607 |
| Cow position: | chr12:15951566-15951052 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 97-557 |
| Cow position: | chr12:8982721-8982263 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 101 |
| Conread position: | 97-606 |
| Cow position: | chr12:8310876-8311391 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 277 |
| Conread position: | 97-607 |
| Cow position: | chr12:2490-3011 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 305 |
| Conread position: | 97-608 |
| Cow position: | chr12:14693346-14693835 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 40, 111 |
| Conread position: | 98-560 |
| Cow position: | chr12:21499812-21500273 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 17 |
| Conread position: | 98-607 |
| Cow position: | chr12:14662916-14662422 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 99-270 |
| Cow position: | chr12:2839900-2839729 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 99-391 |
| Cow position: | chr12:22255457-22255732 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 159 |
| Conread position: | 111-297 |
| Cow position: | chr12:601345-601160 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 163 |
| Conread position: | 111-605 |
| Cow position: | chr12:11097947-11098451 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 285 |
| Conread position: | 111-607 |
| Cow position: | chr12:8678413-8677910 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 115-440 |
| Cow position: | chr12:13949780-13949471 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 122-607 |
| Cow position: | chr12:28766298-28765808 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 150 |
| Conread position: | 141-593 |
| Cow position: | chr12:21227709-21227252 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 311 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 151, 17 |
| Conread position: | 172-503 |
| Cow position: | chr12:17617128-17616799 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 106, 8 |
| Conread position: | 185-373 |
| Cow position: | chr12:42420339-42420149 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 108, 141 |
| Conread position: | 190-607 |
| Cow position: | chr12:26947195-26946774 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 165 |
| Conread position: | 193-605 |
| Cow position: | chr12:17975341-17975746 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 101, 8 |
| Conread position: | 197-549 |
| Cow position: | chr12:347617-347982 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 231-551 |
| Cow position: | chr12:3632427-3632110 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 62, 159 |
| Conread position: | 293-602 |
| Cow position: | chr12:18500942-18501240 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 164, 26 |
| Conread position: | 343-602 |
| Cow position: | chr12:2838913-2838649 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 358-567 |
| Cow position: | chr12:48405233-48405443 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 358-593 |
| Cow position: | chr12:34854833-34854607 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 45 |
| Conread position: | 373-607 |
| Cow position: | chr12:21197935-21198171 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 90, 18 |
| Conread position: | 393-607 |
| Cow position: | chr12:33986158-33986373 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 452-607 |
| Cow position: | chr12:5861209-5861365 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 9, 82 |
| Conread position: | 474-607 |
| Cow position: | chr12:23240082-23240214 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
Show alignments to all cow chromosomes.