Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047O02.5 |
| Conread position: | 1-88 |
| Cow position: | chr13:16921541-16921454 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr13:20573009-20573096 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr13:34343993-34343906 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr13:49613453-49613540 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-89 |
| Cow position: | chr13:11762555-11762642 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 78 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 79-607 |
| Cow position: | chr13:4872532-4873066 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 83-607 |
| Cow position: | chr13:13324217-13324739 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 47 |
| Conread position: | 84-605 |
| Cow position: | chr13:31734620-31734097 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 5 |
| Conread position: | 85-495 |
| Cow position: | chr13:48356786-48357183 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 29, 9 |
| Conread position: | 86-595 |
| Cow position: | chr13:21130792-21131299 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 12 |
| Conread position: | 87-607 |
| Cow position: | chr13:34143189-34142668 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 17 |
| Conread position: | 91-267 |
| Cow position: | chr13:34027737-34027915 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 99 |
| Conread position: | 91-305 |
| Cow position: | chr13:13046357-13046142 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 21, 73 |
| Conread position: | 91-605 |
| Cow position: | chr13:60701808-60701310 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 338 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 91-607 |
| Cow position: | chr13:17307943-17308465 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 91-607 |
| Cow position: | chr13:31612872-31612346 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 306 |
| Conread position: | 91-607 |
| Cow position: | chr13:62328117-62327594 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 71 |
| Conread position: | 93-546 |
| Cow position: | chr13:14392126-14392571 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 302 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 93-585 |
| Cow position: | chr13:58261589-58262074 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 327 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 94-334 |
| Cow position: | chr13:3058525-3058283 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 37, 224 |
| Conread position: | 94-564 |
| Cow position: | chr13:30140463-30140942 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 21 |
| Conread position: | 94-570 |
| Cow position: | chr13:30245266-30244780 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 94-605 |
| Cow position: | chr13:30063619-30064110 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 94-607 |
| Cow position: | chr13:2297329-2296821 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 44 |
| Conread position: | 94-607 |
| Cow position: | chr13:2389326-2388828 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 94-607 |
| Cow position: | chr13:3276623-3277144 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 94-607 |
| Cow position: | chr13:21840728-21840204 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 309 |
| Conread position: | 94-607 |
| Cow position: | chr13:32986578-32986067 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 94-607 |
| Cow position: | chr13:35756706-35757231 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 309 |
| Conread position: | 94-607 |
| Cow position: | chr13:50108934-50109452 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 96 |
| Conread position: | 95-344 |
| Cow position: | chr13:4481945-4482193 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 36, 179 |
| Conread position: | 95-594 |
| Cow position: | chr13:9043979-9044478 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 150 |
| Conread position: | 95-605 |
| Cow position: | chr13:1593686-1593167 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 95-605 |
| Cow position: | chr13:4940555-4941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 306 |
| Conread position: | 95-607 |
| Cow position: | chr13:15521045-15520525 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 304 |
| Conread position: | 95-607 |
| Cow position: | chr13:32738350-32737832 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 95-607 |
| Cow position: | chr13:34042896-34042379 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 67 |
| Conread position: | 95-607 |
| Cow position: | chr13:34326207-34325685 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 93 |
| Conread position: | 95-607 |
| Cow position: | chr13:34911895-34911389 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 8 |
| Conread position: | 95-608 |
| Cow position: | chr13:34187219-34186696 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 489 |
| Conread position: | 96-421 |
| Cow position: | chr13:32544414-32544744 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 96-591 |
| Cow position: | chr13:33336853-33336369 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 178 |
| Conread position: | 96-607 |
| Cow position: | chr13:33825260-33824745 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 98 |
| Conread position: | 96-607 |
| Cow position: | chr13:54284064-54284560 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 97-607 |
| Cow position: | chr13:2908973-2908459 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 80 |
| Conread position: | 97-607 |
| Cow position: | chr13:3654840-3654336 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 300 |
| Conread position: | 97-607 |
| Cow position: | chr13:20542890-20542385 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 97 |
| Conread position: | 97-607 |
| Cow position: | chr13:31832079-31832590 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 89 |
| Conread position: | 98-607 |
| Cow position: | chr13:6668650-6668133 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 100-451 |
| Cow position: | chr13:34868241-34868606 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 103 |
| Conread position: | 104-348 |
| Cow position: | chr13:47859931-47860173 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 27, 64 |
| Conread position: | 104-456 |
| Cow position: | chr13:2232137-2232498 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 298 |
| Conread position: | 104-607 |
| Cow position: | chr13:34936612-34937137 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 109-607 |
| Cow position: | chr13:56730787-56730297 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 14 |
| Conread position: | 111-404 |
| Cow position: | chr13:30237655-30237952 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 18, 247 |
| Conread position: | 111-499 |
| Cow position: | chr13:30302557-30302946 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 44 |
| Conread position: | 111-598 |
| Cow position: | chr13:2305988-2306475 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 111-605 |
| Cow position: | chr13:30657476-30656989 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 81 |
| Conread position: | 111-607 |
| Cow position: | chr13:15924898-15924394 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 283 |
| Conread position: | 111-607 |
| Cow position: | chr13:33928074-33927597 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 111-607 |
| Cow position: | chr13:34692648-34693155 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 112-551 |
| Cow position: | chr13:5718474-5718902 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 25, 83 |
| Conread position: | 115-605 |
| Cow position: | chr13:31560682-31561176 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 52 |
| Conread position: | 163-522 |
| Cow position: | chr13:10115081-10114748 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 48 |
| Conread position: | 168-607 |
| Cow position: | chr13:49973226-49973674 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 232 |
| Conread position: | 180-637 |
| Cow position: | chr13:23003960-23003499 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 20 |
| Conread position: | 185-597 |
| Cow position: | chr13:27748647-27748232 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 73, 28 |
| Conread position: | 190-524 |
| Cow position: | chr13:2583736-2583399 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 93 |
| Conread position: | 192-605 |
| Cow position: | chr13:22186157-22185751 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 103 |
| Conread position: | 193-608 |
| Cow position: | chr13:19438509-19438924 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 187 |
| Conread position: | 202-607 |
| Cow position: | chr13:35030125-35030542 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 88, 169 |
| Conread position: | 206-607 |
| Cow position: | chr13:676465-676866 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 241-466 |
| Cow position: | chr13:15451868-15451650 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 107 |
| Conread position: | 262-601 |
| Cow position: | chr13:34767638-34767302 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 59 |
| Conread position: | 263-607 |
| Cow position: | chr13:3567423-3567784 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 135 |
| Conread position: | 290-607 |
| Cow position: | chr13:32544735-32545049 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 329-607 |
| Cow position: | chr13:47230280-47229997 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 359-592 |
| Cow position: | chr13:46732480-46732251 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 78 |
| Conread position: | 367-607 |
| Cow position: | chr13:4178901-4178661 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 28 |
| Conread position: | 372-529 |
| Cow position: | chr13:47860537-47860704 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 389-599 |
| Cow position: | chr13:4483569-4483779 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 69, 48 |
| Conread position: | 404-596 |
| Cow position: | chr13:3338573-3338767 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 165 |
| Conread position: | 441-596 |
| Cow position: | chr13:30237941-30238097 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 446-607 |
| Cow position: | chr13:60466165-60466327 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 450-607 |
| Cow position: | chr13:3058279-3058120 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 483-607 |
| Cow position: | chr13:34868606-34868732 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 92 |
Show alignments to all cow chromosomes.