Cow genome map

Conread name: Ss1.1-Pig4-TMW8047O02.5

Conread position: 1-88
Cow position: chr17:2264363-2264276 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr17:3742334-3742247 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr17:36284209-36284122 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr17:39050615-39050528 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-89
Cow position: chr17:23721450-23721362 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 73-607
Cow position: chr17:44853366-44852834 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 19

Conread position: 79-534
Cow position: chr17:22160476-22160941 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 323

Conread position: 79-607
Cow position: chr17:1383251-1382716 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 111

Conread position: 79-607
Cow position: chr17:6089601-6089063 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 323

Conread position: 79-607
Cow position: chr17:24633517-24634052 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 151

Conread position: 81-607
Cow position: chr17:2587897-2588401 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 97

Conread position: 84-605
Cow position: chr17:15157393-15156868 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 5

Conread position: 84-607
Cow position: chr17:2261676-2262204 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 5

Conread position: 85-607
Cow position: chr17:8208677-8209204 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 26

Conread position: 87-607
Cow position: chr17:23857467-23856936 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 123

Conread position: 90-424
Cow position: chr17:28109658-28110001 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 70

Conread position: 91-345
Cow position: chr17:2737949-2738208 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 10, 0

Conread position: 91-605
Cow position: chr17:6002440-6001922 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 74

Conread position: 91-607
Cow position: chr17:2286947-2287484 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 231

Conread position: 91-607
Cow position: chr17:22429911-22429396 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 311

Conread position: 92-602
Cow position: chr17:15370649-15371143 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 69

Conread position: 92-605
Cow position: chr17:15435361-15435887 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 314

Conread position: 92-608
Cow position: chr17:15849971-15850496 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 193

Conread position: 93-583
Cow position: chr17:42264101-42264578 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 93

Conread position: 93-607
Cow position: chr17:2146786-2147269 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 17

Conread position: 94-393
Cow position: chr17:11782946-11783247 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 183
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 37, 224

Conread position: 94-570
Cow position: chr17:24780623-24781109 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 302

Conread position: 94-585
Cow position: chr17:16859982-16859485 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 69

Conread position: 94-586
Cow position: chr17:39933266-39933732 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 34

Conread position: 94-607
Cow position: chr17:228725-228210 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 17

Conread position: 94-607
Cow position: chr17:2249006-2248486 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 224

Conread position: 94-607
Cow position: chr17:4081230-4081726 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 17

Conread position: 94-607
Cow position: chr17:9653874-9653358 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 92

Conread position: 94-607
Cow position: chr17:14217449-14216925 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 308

Conread position: 94-607
Cow position: chr17:14893739-14894251 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 21

Conread position: 94-607
Cow position: chr17:20401258-20401759 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 16

Conread position: 94-607
Cow position: chr17:20666151-20665628 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 308

Conread position: 95-404
Cow position: chr17:2579137-2579447 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 218
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 19, 9

Conread position: 95-488
Cow position: chr17:15322407-15322788 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 91

Conread position: 95-584
Cow position: chr17:14325917-14325432 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 9

Conread position: 95-585
Cow position: chr17:18104104-18103604 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 293

Conread position: 95-602
Cow position: chr17:4059683-4060192 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 9

Conread position: 95-602
Cow position: chr17:43988112-43988626 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 95

Conread position: 95-607
Cow position: chr17:13857197-13856671 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 9

Conread position: 95-607
Cow position: chr17:13929244-13929766 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 95-607
Cow position: chr17:19269788-19269268 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 101

Conread position: 96-549
Cow position: chr17:14308728-14308273 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 64

Conread position: 96-606
Cow position: chr17:25737237-25737760 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 90

Conread position: 96-607
Cow position: chr17:1879665-1880192 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 130

Conread position: 97-451
Cow position: chr17:1284179-1283847 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 97

Conread position: 97-607
Cow position: chr17:4294955-4295442 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 86

Conread position: 100-384
Cow position: chr17:40803982-40804268 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 138, 167

Conread position: 100-607
Cow position: chr17:249505-250037 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 11

Conread position: 100-607
Cow position: chr17:2173458-2173976 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 298

Conread position: 104-419
Cow position: chr17:13893947-13893626 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 69

Conread position: 108-607
Cow position: chr17:23324852-23324356 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 144

Conread position: 108-607
Cow position: chr17:35591804-35592312 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 292

Conread position: 111-605
Cow position: chr17:16889719-16890220 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 49

Conread position: 111-607
Cow position: chr17:152872-152378 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 37

Conread position: 111-607
Cow position: chr17:3643244-3642738 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 290

Conread position: 111-607
Cow position: chr17:11088129-11087626 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 79

Conread position: 112-607
Cow position: chr17:27345401-27345896 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 39

Conread position: 116-602
Cow position: chr17:1658960-1658473 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 333
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 21, 71

Conread position: 130-607
Cow position: chr17:1946589-1947067 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 270

Conread position: 130-608
Cow position: chr17:20183612-20183132 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 60

Conread position: 136-607
Cow position: chr17:18185905-18185437 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 191

Conread position: 138-592
Cow position: chr17:4286717-4287164 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 299
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 119, 67

Conread position: 142-514
Cow position: chr17:4671820-4672196 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 267
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 46, 55

Conread position: 181-599
Cow position: chr17:22131898-22132318 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 107

Conread position: 184-607
Cow position: chr17:6259512-6259942 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 215

Conread position: 192-602
Cow position: chr17:20088055-20087651 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 116

Conread position: 192-603
Cow position: chr17:15143694-15143273 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 209

Conread position: 220-517
Cow position: chr17:15381697-15381988 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 194
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 236, 91

Conread position: 229-457
Cow position: chr17:18192926-18193145 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 0

Conread position: 247-607
Cow position: chr17:18027027-18026659 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 156

Conread position: 255-607
Cow position: chr17:2555861-2556220 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 146

Conread position: 342-607
Cow position: chr17:2579459-2579713 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 116, 48

Conread position: 357-560
Cow position: chr17:31199795-31199599 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 15, 35

Conread position: 382-607
Cow position: chr17:40804689-40804914 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 10

Conread position: 405-607
Cow position: chr17:181258-181461 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 429-606
Cow position: chr17:26205888-26205710 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 29, 0

Conread position: 456-607
Cow position: chr17:1283758-1283607 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 479-607
Cow position: chr17:15323216-15323343 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 83, 0

Conread position: 483-607
Cow position: chr17:31768065-31767941 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 483-607
Cow position: chr17:43952588-43952465 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 0

Conread position: 486-607
Cow position: chr17:22557599-22557720 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 68

Conread position: 490-607
Cow position: chr17:34156109-34156226 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 493-607
Cow position: chr17:36987687-36987573 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 99
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 520-607
Cow position: chr17:602694-602781 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.