Cow genome map

Conread name: Ss1.1-Pig4-TMW8047O02.5

Conread position: 1-86
Cow position: chr18:37701099-37701184 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 76
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr18:1956779-1956866 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr18:3755334-3755247 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr18:9722999-9722912 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr18:25941293-25941206 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr18:26244185-26244272 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr18:28767192-28767105 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr18:30762568-30762655 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 74-496
Cow position: chr18:29900091-29900500 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 265
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 58

Conread position: 77-607
Cow position: chr18:51689394-51689930 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 76

Conread position: 79-312
Cow position: chr18:37585895-37585659 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 52, 173

Conread position: 79-607
Cow position: chr18:16078471-16079023 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 249

Conread position: 79-607
Cow position: chr18:22602255-22602793 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 323

Conread position: 79-607
Cow position: chr18:33953799-33953269 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 185

Conread position: 83-607
Cow position: chr18:41841056-41840519 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 315

Conread position: 84-366
Cow position: chr18:51660191-51660476 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 50, 5

Conread position: 84-604
Cow position: chr18:16393868-16393344 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 247

Conread position: 91-607
Cow position: chr18:33335650-33336168 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 100

Conread position: 91-607
Cow position: chr18:51257761-51258289 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 171

Conread position: 92-578
Cow position: chr18:16863862-16864338 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 314
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 5, 18

Conread position: 92-607
Cow position: chr18:1520916-1521451 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 17

Conread position: 92-607
Cow position: chr18:2019902-2019379 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 94

Conread position: 92-607
Cow position: chr18:35335271-35335785 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 10

Conread position: 93-366
Cow position: chr18:45958476-45958742 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 195
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 38, 97

Conread position: 93-607
Cow position: chr18:16533765-16534284 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 90

Conread position: 94-312
Cow position: chr18:51464688-51464472 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 160
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 96

Conread position: 94-457
Cow position: chr18:44621540-44621914 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 304

Conread position: 94-607
Cow position: chr18:19352168-19352691 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 307

Conread position: 94-607
Cow position: chr18:47719779-47719278 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 21

Conread position: 94-607
Cow position: chr18:47741801-47742324 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 307

Conread position: 94-607
Cow position: chr18:55089142-55088619 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 307

Conread position: 95-351
Cow position: chr18:32651780-32652039 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 181
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 36, 126

Conread position: 95-526
Cow position: chr18:16660220-16659793 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 9

Conread position: 95-588
Cow position: chr18:54024571-54024074 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 29

Conread position: 95-596
Cow position: chr18:16176822-16176319 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 9

Conread position: 95-602
Cow position: chr18:40478167-40478683 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 306

Conread position: 95-607
Cow position: chr18:14415763-14416281 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 95

Conread position: 95-607
Cow position: chr18:27838519-27838011 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 216

Conread position: 95-607
Cow position: chr18:28974114-28973597 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 93

Conread position: 95-607
Cow position: chr18:36508117-36508638 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 306

Conread position: 95-607
Cow position: chr18:51480624-51481145 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 95-607
Cow position: chr18:54172059-54171558 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 278

Conread position: 97-327
Cow position: chr18:19540089-19539855 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 174
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 34, 162

Conread position: 97-468
Cow position: chr18:17992775-17992398 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 85

Conread position: 97-607
Cow position: chr18:9186976-9186468 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 108

Conread position: 97-607
Cow position: chr18:11275314-11274800 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 128

Conread position: 97-607
Cow position: chr18:33358654-33359171 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 91

Conread position: 97-607
Cow position: chr18:37599742-37599236 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 294

Conread position: 97-607
Cow position: chr18:39748368-39748884 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 95

Conread position: 97-607
Cow position: chr18:43147139-43146620 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 304

Conread position: 97-607
Cow position: chr18:48221664-48222184 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 480

Conread position: 97-607
Cow position: chr18:51310368-51310891 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 137

Conread position: 97-608
Cow position: chr18:32293561-32294070 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 177

Conread position: 99-607
Cow position: chr18:6869468-6868953 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 88

Conread position: 104-551
Cow position: chr18:43200858-43201304 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 87

Conread position: 111-605
Cow position: chr18:33268641-33269129 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 218

Conread position: 111-605
Cow position: chr18:37504865-37505367 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 51

Conread position: 111-607
Cow position: chr18:23797451-23797953 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 109

Conread position: 111-607
Cow position: chr18:23944571-23944069 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 51

Conread position: 115-605
Cow position: chr18:16877290-16877772 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 82

Conread position: 115-605
Cow position: chr18:44601347-44601823 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 31

Conread position: 117-317
Cow position: chr18:54269276-54269476 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 77

Conread position: 130-605
Cow position: chr18:53785662-53786143 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 60

Conread position: 131-384
Cow position: chr18:29763279-29763539 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 227, 0

Conread position: 160-345
Cow position: chr18:22869605-22869793 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 142
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 162-316
Cow position: chr18:40345470-40345315 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 131, 0

Conread position: 162-607
Cow position: chr18:29236671-29237114 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 81

Conread position: 168-607
Cow position: chr18:2887164-2886716 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 233

Conread position: 178-605
Cow position: chr18:51341554-51341990 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 223

Conread position: 181-495
Cow position: chr18:35288402-35288729 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 9, 79

Conread position: 181-607
Cow position: chr18:54044829-54044417 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 183

Conread position: 192-598
Cow position: chr18:20832726-20833134 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 251
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 68, 86

Conread position: 217-608
Cow position: chr18:51237430-51237817 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 249
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 77, 99

Conread position: 238-607
Cow position: chr18:5980371-5980735 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 249
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 94, 56

Conread position: 250-607
Cow position: chr18:14130330-14130690 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 144

Conread position: 266-607
Cow position: chr18:52650888-52651225 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 50

Conread position: 289-606
Cow position: chr18:114376-114694 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 51

Conread position: 316-570
Cow position: chr18:25350673-25350934 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 50, 82

Conread position: 329-585
Cow position: chr18:19539558-19539296 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 69

Conread position: 345-607
Cow position: chr18:24040689-24040427 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 47

Conread position: 353-605
Cow position: chr18:36211067-36210815 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 18, 41

Conread position: 358-581
Cow position: chr18:32652277-32652499 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 32

Conread position: 358-607
Cow position: chr18:51463018-51462773 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 33

Conread position: 360-568
Cow position: chr18:54269642-54269860 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 25, 72

Conread position: 369-602
Cow position: chr18:16843268-16843038 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 22

Conread position: 387-681
Cow position: chr18:18089388-18089107 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 203

Conread position: 427-608
Cow position: chr18:27987185-27987367 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 33, 0

Conread position: 459-601
Cow position: chr18:17992263-17992121 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 119
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 459-605
Cow position: chr18:45958876-45959020 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 493-607
Cow position: chr18:56462711-56462597 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.