Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047O02.5 |
| Conread position: | 1-88 |
| Cow position: | chr19:16318213-16318300 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-316 |
| Cow position: | chr19:35376330-35376572 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 55, 10 |
| Conread position: | 79-463 |
| Cow position: | chr19:32193348-32193747 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 84 |
| Conread position: | 79-607 |
| Cow position: | chr19:32244452-32244994 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 327 |
| Conread position: | 84-607 |
| Cow position: | chr19:37679-38205 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 84-607 |
| Cow position: | chr19:32212289-32211763 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 88-607 |
| Cow position: | chr19:32665312-32665835 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 76 |
| Conread position: | 91-264 |
| Cow position: | chr19:32238082-32237898 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 91-514 |
| Cow position: | chr19:55078528-55078963 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 305 |
| Conread position: | 91-526 |
| Cow position: | chr19:20125409-20125837 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 91-605 |
| Cow position: | chr19:7450209-7449717 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 334 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 91-607 |
| Cow position: | chr19:416437-416971 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 322 |
| Conread position: | 92-427 |
| Cow position: | chr19:4532957-4532625 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 99 |
| Conread position: | 92-607 |
| Cow position: | chr19:170953-170437 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 92-607 |
| Cow position: | chr19:1031895-1032385 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 23 |
| Conread position: | 93-305 |
| Cow position: | chr19:17018310-17018517 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 99 |
| Conread position: | 93-534 |
| Cow position: | chr19:359709-359272 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 26 |
| Conread position: | 94-521 |
| Cow position: | chr19:34211-34640 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 50 |
| Conread position: | 94-534 |
| Cow position: | chr19:30372070-30372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 88 |
| Conread position: | 94-573 |
| Cow position: | chr19:35979056-35979543 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 100 |
| Conread position: | 94-601 |
| Cow position: | chr19:76446-75965 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 65 |
| Conread position: | 94-607 |
| Cow position: | chr19:171998-172521 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 307 |
| Conread position: | 94-607 |
| Cow position: | chr19:7341859-7342378 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 95-585 |
| Cow position: | chr19:4385273-4385769 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 179 |
| Conread position: | 95-601 |
| Cow position: | chr19:32223640-32223144 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 91 |
| Conread position: | 95-605 |
| Cow position: | chr19:439858-439349 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 249 |
| Conread position: | 95-605 |
| Cow position: | chr19:40852642-40852130 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 95-607 |
| Cow position: | chr19:893814-893305 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 95-607 |
| Cow position: | chr19:7488101-7488623 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 306 |
| Conread position: | 95-607 |
| Cow position: | chr19:10672518-10671996 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 223 |
| Conread position: | 95-607 |
| Cow position: | chr19:33941400-33941920 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 306 |
| Conread position: | 95-607 |
| Cow position: | chr19:39390310-39390818 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 95-607 |
| Cow position: | chr19:39688333-39688837 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 95-608 |
| Cow position: | chr19:378085-377598 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 68 |
| Conread position: | 96-557 |
| Cow position: | chr19:28593065-28593537 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 303 |
| Conread position: | 96-571 |
| Cow position: | chr19:39546416-39546897 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 99 |
| Conread position: | 96-607 |
| Cow position: | chr19:28581864-28581349 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 97-309 |
| Cow position: | chr19:685633-685849 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 97-376 |
| Cow position: | chr19:4252567-4252284 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 98 |
| Conread position: | 97-456 |
| Cow position: | chr19:29209357-29209717 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 58 |
| Conread position: | 97-607 |
| Cow position: | chr19:772388-772909 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 66 |
| Conread position: | 99-398 |
| Cow position: | chr19:561707-561409 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 16, 40 |
| Conread position: | 99-599 |
| Cow position: | chr19:203756-204263 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 102 |
| Conread position: | 99-601 |
| Cow position: | chr19:20111426-20110952 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 99-602 |
| Cow position: | chr19:40887858-40887352 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 94 |
| Conread position: | 103-327 |
| Cow position: | chr19:52152465-52152237 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 104-582 |
| Cow position: | chr19:261234-261728 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 105-297 |
| Cow position: | chr19:42649275-42649082 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 8, 82 |
| Conread position: | 105-602 |
| Cow position: | chr19:15953658-15954142 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 79 |
| Conread position: | 108-551 |
| Cow position: | chr19:31341512-31341976 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 111-607 |
| Cow position: | chr19:43143522-43144026 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 80 |
| Conread position: | 130-551 |
| Cow position: | chr19:30755002-30755434 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 192 |
| Conread position: | 134-444 |
| Cow position: | chr19:27052934-27052623 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 54 |
| Conread position: | 142-513 |
| Cow position: | chr19:543790-543410 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 151-601 |
| Cow position: | chr19:42248661-42249108 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 177 |
| Conread position: | 159-425 |
| Cow position: | chr19:28376385-28376645 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 178, 128 |
| Conread position: | 168-584 |
| Cow position: | chr19:42299633-42299209 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 285 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 112, 88 |
| Conread position: | 184-607 |
| Cow position: | chr19:33873306-33873736 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 215 |
| Conread position: | 199-607 |
| Cow position: | chr19:6553505-6553910 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 168 |
| Conread position: | 201-607 |
| Cow position: | chr19:350387-349981 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 170 |
| Conread position: | 238-477 |
| Cow position: | chr19:18728790-18729030 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 57, 90 |
| Conread position: | 250-519 |
| Cow position: | chr19:32237735-32237460 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 148 |
| Conread position: | 307-607 |
| Cow position: | chr19:52151829-52151520 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 322-607 |
| Cow position: | chr19:35376814-35377091 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 28 |
| Conread position: | 330-607 |
| Cow position: | chr19:20104742-20105023 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 65 |
| Conread position: | 349-608 |
| Cow position: | chr19:352941-352680 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 191 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 111, 36 |
| Conread position: | 358-607 |
| Cow position: | chr19:687126-687373 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 25 |
| Conread position: | 359-603 |
| Cow position: | chr19:1491673-1491433 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 17, 95 |
| Conread position: | 366-607 |
| Cow position: | chr19:2274309-2274068 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 25 |
| Conread position: | 405-607 |
| Cow position: | chr19:42649005-42648804 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 56, 185 |
| Conread position: | 456-596 |
| Cow position: | chr19:4532625-4532485 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 459-607 |
| Cow position: | chr19:28376646-28376796 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 460-605 |
| Cow position: | chr19:29209762-29209905 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 467-605 |
| Cow position: | chr19:439291-439153 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 469-607 |
| Cow position: | chr19:5729000-5729139 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 483-607 |
| Cow position: | chr19:40817517-40817393 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 491-605 |
| Cow position: | chr19:341416-341529 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 7, 0 |
Show alignments to all cow chromosomes.