Cow genome map

Conread name: Ss1.1-Pig4-TMW8047O02.5

Conread position: 1-88
Cow position: chr20:6905993-6906080 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr20:29757920-29758007 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr20:30430632-30430545 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 79-373
Cow position: chr20:19192399-19192101 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 207
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 52, 0

Conread position: 79-607
Cow position: chr20:5560986-5560448 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 323

Conread position: 84-585
Cow position: chr20:19437693-19438192 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 5

Conread position: 84-607
Cow position: chr20:822486-823034 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 5

Conread position: 89-607
Cow position: chr20:30684076-30684587 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 187

Conread position: 91-281
Cow position: chr20:3032677-3032868 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 153
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 20, 69

Conread position: 91-408
Cow position: chr20:10846339-10846010 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 308

Conread position: 91-607
Cow position: chr20:5483931-5484457 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 72

Conread position: 91-607
Cow position: chr20:15098128-15097610 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 13

Conread position: 91-607
Cow position: chr20:27868936-27869464 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 73

Conread position: 92-334
Cow position: chr20:24516608-24516852 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 169
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 155

Conread position: 92-439
Cow position: chr20:10102805-10102461 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 71

Conread position: 92-606
Cow position: chr20:3270458-3270970 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 92

Conread position: 93-389
Cow position: chr20:28593483-28593787 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 70

Conread position: 93-605
Cow position: chr20:23798625-23799151 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 303

Conread position: 94-348
Cow position: chr20:8994072-8993817 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 170
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 108

Conread position: 94-448
Cow position: chr20:22717943-22717587 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 60

Conread position: 94-557
Cow position: chr20:37579203-37579656 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 309
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 45, 17

Conread position: 94-597
Cow position: chr20:20755688-20755193 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 339
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 25, 270

Conread position: 94-601
Cow position: chr20:22206287-22206797 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 148

Conread position: 94-602
Cow position: chr20:3252388-3251873 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 21

Conread position: 95-479
Cow position: chr20:21393318-21393703 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 97

Conread position: 95-605
Cow position: chr20:28160526-28161035 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 106

Conread position: 95-607
Cow position: chr20:5534687-5535204 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 95

Conread position: 95-607
Cow position: chr20:12439016-12438494 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 306

Conread position: 95-607
Cow position: chr20:13762651-13763171 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 95

Conread position: 95-607
Cow position: chr20:21914071-21914594 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 95-607
Cow position: chr20:23469915-23469399 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 302

Conread position: 95-607
Cow position: chr20:25851245-25850724 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 305

Conread position: 95-607
Cow position: chr20:28565855-28565329 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 310

Conread position: 97-438
Cow position: chr20:4799898-4799554 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 89

Conread position: 97-602
Cow position: chr20:24614297-24614797 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 95

Conread position: 99-335
Cow position: chr20:35119076-35119313 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 32, 12

Conread position: 99-446
Cow position: chr20:29572434-29572088 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 65

Conread position: 101-607
Cow position: chr20:13665440-13664948 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 56

Conread position: 103-605
Cow position: chr20:31379129-31378623 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 52

Conread position: 104-607
Cow position: chr20:7116717-7116202 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 299

Conread position: 108-607
Cow position: chr20:9954211-9953719 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 10

Conread position: 111-607
Cow position: chr20:8313672-8313173 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 79

Conread position: 111-607
Cow position: chr20:15064530-15065032 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 51

Conread position: 111-622
Cow position: chr20:18315819-18315329 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 82

Conread position: 115-532
Cow position: chr20:11679345-11678918 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 287

Conread position: 115-592
Cow position: chr20:20905418-20904959 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 313
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 267, 27

Conread position: 139-607
Cow position: chr20:35119365-35119837 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 124

Conread position: 140-449
Cow position: chr20:35973620-35973299 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 87, 40

Conread position: 141-596
Cow position: chr20:2791549-2791086 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 303
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 146, 63

Conread position: 143-312
Cow position: chr20:24390168-24390340 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 47, 0

Conread position: 156-492
Cow position: chr20:18328246-18327918 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 226
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 179, 67

Conread position: 165-502
Cow position: chr20:24516853-24517193 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 221
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 128, 21

Conread position: 168-607
Cow position: chr20:29948338-29948766 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 107

Conread position: 184-607
Cow position: chr20:15291854-15292277 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 88

Conread position: 189-599
Cow position: chr20:8004384-8003967 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 210

Conread position: 223-607
Cow position: chr20:15947518-15947113 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 177

Conread position: 224-589
Cow position: chr20:28476194-28476547 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 248
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 234, 32

Conread position: 233-596
Cow position: chr20:28463371-28463729 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 240
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 34, 27

Conread position: 236-607
Cow position: chr20:25960991-25961370 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 80

Conread position: 250-605
Cow position: chr20:3032966-3033326 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 69

Conread position: 255-607
Cow position: chr20:13680150-13679791 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 138

Conread position: 307-607
Cow position: chr20:3684524-3684221 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 91

Conread position: 362-601
Cow position: chr20:8993622-8993385 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 96, 21

Conread position: 364-531
Cow position: chr20:13767413-13767580 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 111

Conread position: 406-605
Cow position: chr20:10856967-10856769 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 191, 147

Conread position: 447-605
Cow position: chr20:10846011-10845857 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 0

Show alignments to all cow chromosomes.