Cow genome map

Conread name: Ss1.1-Pig4-TMW8047O02.5

Conread position: 1-86
Cow position: chr21:47976306-47976221 (view UCSC Genome Browser custom track)
Alignm length: 86
Alignm identity: 75
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr21:995956-996043 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr21:2418676-2418589 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr21:13299042-13298955 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 78
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr21:28614788-28614701 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr21:29949493-29949580 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-89
Cow position: chr21:31489-31401 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 78
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 74-607
Cow position: chr21:11453810-11453270 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 111

Conread position: 79-345
Cow position: chr21:17572772-17573039 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 189
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 52, 111

Conread position: 79-423
Cow position: chr21:27708610-27708964 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 106

Conread position: 79-557
Cow position: chr21:2476662-2476191 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 237

Conread position: 79-607
Cow position: chr21:4090498-4091035 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 238

Conread position: 84-607
Cow position: chr21:26638609-26638079 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 8

Conread position: 87-594
Cow position: chr21:6699702-6699209 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 323
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 51, 28

Conread position: 89-336
Cow position: chr21:27617-27852 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 181
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 14, 0

Conread position: 90-367
Cow position: chr21:444985-445264 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 95

Conread position: 91-424
Cow position: chr21:21517063-21517391 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 230
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 49, 122

Conread position: 91-475
Cow position: chr21:2716816-2716428 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 20

Conread position: 91-602
Cow position: chr21:36714496-36715009 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 8

Conread position: 91-605
Cow position: chr21:216169-216673 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 74

Conread position: 91-605
Cow position: chr21:993158-992645 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 20

Conread position: 91-607
Cow position: chr21:358875-359419 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 190

Conread position: 91-607
Cow position: chr21:2883876-2883362 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 101

Conread position: 91-607
Cow position: chr21:13124133-13123620 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 20

Conread position: 91-610
Cow position: chr21:23860641-23861167 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 239

Conread position: 92-457
Cow position: chr21:26819154-26818786 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 95

Conread position: 92-494
Cow position: chr21:34259351-34258957 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 70

Conread position: 92-528
Cow position: chr21:21031597-21032034 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 276
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 12

Conread position: 92-607
Cow position: chr21:37044775-37045296 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 31

Conread position: 92-607
Cow position: chr21:39424924-39425449 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 309

Conread position: 92-607
Cow position: chr21:46915448-46915974 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 311

Conread position: 93-584
Cow position: chr21:20744885-20744402 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 22

Conread position: 93-607
Cow position: chr21:1292307-1291805 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 18

Conread position: 94-363
Cow position: chr21:28529679-28529408 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 168
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 37, 17

Conread position: 94-602
Cow position: chr21:21947938-21947427 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 97

Conread position: 94-607
Cow position: chr21:2510518-2511037 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 96

Conread position: 94-607
Cow position: chr21:7267672-7267151 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 17

Conread position: 94-607
Cow position: chr21:11505450-11505982 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 308

Conread position: 94-607
Cow position: chr21:12056134-12055615 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 96

Conread position: 95-323
Cow position: chr21:2501802-2502023 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 162
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 36, 67

Conread position: 95-399
Cow position: chr21:1190906-1191219 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 296

Conread position: 95-556
Cow position: chr21:33755164-33755636 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 207

Conread position: 95-591
Cow position: chr21:4222824-4222322 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 308

Conread position: 95-594
Cow position: chr21:3778632-3779139 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 126

Conread position: 95-605
Cow position: chr21:2674773-2674228 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 189

Conread position: 95-607
Cow position: chr21:145784-146308 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 87

Conread position: 95-607
Cow position: chr21:9891475-9891989 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 102

Conread position: 95-607
Cow position: chr21:10849944-10850465 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 301

Conread position: 95-607
Cow position: chr21:30561666-30562188 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 306

Conread position: 95-607
Cow position: chr21:30600051-30599540 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 95

Conread position: 95-608
Cow position: chr21:2541552-2541026 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 312

Conread position: 96-600
Cow position: chr21:3426352-3426864 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 91

Conread position: 96-607
Cow position: chr21:48115969-48116487 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 121

Conread position: 97-448
Cow position: chr21:3615160-3615518 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 57

Conread position: 97-599
Cow position: chr21:47939345-47939849 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 126

Conread position: 97-606
Cow position: chr21:2530260-2529743 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 155

Conread position: 98-605
Cow position: chr21:4076714-4077221 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 80

Conread position: 98-607
Cow position: chr21:35596236-35596752 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 64

Conread position: 99-607
Cow position: chr21:34292889-34293401 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 12

Conread position: 100-607
Cow position: chr21:47947980-47948494 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 19

Conread position: 104-607
Cow position: chr21:10566551-10567054 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 86

Conread position: 105-582
Cow position: chr21:2769589-2769114 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 58

Conread position: 106-607
Cow position: chr21:4456710-4457212 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 15

Conread position: 111-486
Cow position: chr21:33251272-33251657 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 290

Conread position: 111-602
Cow position: chr21:2416120-2416600 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 78

Conread position: 111-606
Cow position: chr21:4183418-4183903 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 49

Conread position: 111-607
Cow position: chr21:31559775-31559270 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 290

Conread position: 111-616
Cow position: chr21:25992739-25992224 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 338
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 22, 84

Conread position: 145-608
Cow position: chr21:26823311-26822847 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 45

Conread position: 159-607
Cow position: chr21:2789061-2788607 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 239

Conread position: 182-607
Cow position: chr21:23811829-23812261 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 217

Conread position: 185-595
Cow position: chr21:21914241-21914659 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 215

Conread position: 189-607
Cow position: chr21:4590030-4589605 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 202

Conread position: 198-605
Cow position: chr21:23601165-23601574 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 270
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 8, 71

Conread position: 214-607
Cow position: chr21:27282372-27282771 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 281

Conread position: 223-601
Cow position: chr21:3194390-3194759 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 249
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 134, 96

Conread position: 225-568
Cow position: chr21:8678364-8678013 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 175

Conread position: 225-607
Cow position: chr21:6339562-6339952 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 175

Conread position: 235-532
Cow position: chr21:37147524-37147820 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 59, 91

Conread position: 279-564
Cow position: chr21:34054689-34054392 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 200
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 120, 71

Conread position: 289-607
Cow position: chr21:40271615-40271291 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 108

Conread position: 330-607
Cow position: chr21:18820313-18820044 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 198
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 131, 23

Conread position: 344-607
Cow position: chr21:2502018-2502276 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 185
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 67, 39

Conread position: 353-596
Cow position: chr21:1191295-1191538 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 25

Conread position: 360-607
Cow position: chr21:3798232-3797985 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 31

Conread position: 399-607
Cow position: chr21:26650218-26650427 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 162
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 59, 0

Conread position: 426-590
Cow position: chr21:35143972-35144129 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 112

Conread position: 459-608
Cow position: chr21:30226257-30226406 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 479-607
Cow position: chr21:3615570-3615697 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 108
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 87, 0

Conread position: 483-607
Cow position: chr21:34258728-34258603 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 106
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 71, 0

Conread position: 499-608
Cow position: chr21:9870024-9870133 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 508-607
Cow position: chr21:2716431-2716332 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 85
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.