Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047O02.5 |
| Conread position: | 1-88 |
| Cow position: | chr23:4101967-4102054 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr23:4266551-4266638 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr23:7313802-7313889 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr23:11713568-11713655 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr23:19491848-19491761 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr23:21792178-21792265 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-486 |
| Cow position: | chr23:16481678-16481280 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 47 |
| Conread position: | 79-607 |
| Cow position: | chr23:31446490-31447028 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 323 |
| Conread position: | 81-607 |
| Cow position: | chr23:16617172-16616633 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 5 |
| Conread position: | 84-362 |
| Cow position: | chr23:19017388-19017657 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 84-607 |
| Cow position: | chr23:4359511-4360043 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 89-291 |
| Cow position: | chr23:16616178-16615979 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 89-607 |
| Cow position: | chr23:28913096-28913609 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 312 |
| Conread position: | 91-605 |
| Cow position: | chr23:19332712-19332198 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 109 |
| Conread position: | 91-607 |
| Cow position: | chr23:4434152-4434669 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 92-299 |
| Cow position: | chr23:2725547-2725754 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 39, 90 |
| Conread position: | 92-584 |
| Cow position: | chr23:34174873-34175369 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 92-605 |
| Cow position: | chr23:15220211-15219680 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 311 |
| Conread position: | 92-607 |
| Cow position: | chr23:5779392-5778874 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 37 |
| Conread position: | 94-312 |
| Cow position: | chr23:2716043-2716259 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 94-397 |
| Cow position: | chr23:22875938-22875632 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 16 |
| Conread position: | 94-607 |
| Cow position: | chr23:2313547-2313027 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 308 |
| Conread position: | 94-607 |
| Cow position: | chr23:15525300-15525823 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 100 |
| Conread position: | 94-607 |
| Cow position: | chr23:19950894-19950370 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 313 |
| Conread position: | 94-607 |
| Cow position: | chr23:20301902-20302426 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 310 |
| Conread position: | 94-607 |
| Cow position: | chr23:28216982-28217503 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 95-297 |
| Cow position: | chr23:1330594-1330392 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 45, 97 |
| Conread position: | 95-570 |
| Cow position: | chr23:4815766-4816251 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 63 |
| Conread position: | 95-593 |
| Cow position: | chr23:4751700-4752186 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 286 |
| Conread position: | 95-599 |
| Cow position: | chr23:2027426-2026914 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 97 |
| Conread position: | 95-602 |
| Cow position: | chr23:2795870-2795356 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 179 |
| Conread position: | 95-603 |
| Cow position: | chr23:967656-967141 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 95-607 |
| Cow position: | chr23:2574257-2574748 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 145 |
| Conread position: | 95-607 |
| Cow position: | chr23:3882003-3881492 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 94 |
| Conread position: | 95-607 |
| Cow position: | chr23:19489232-19489755 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 95-607 |
| Cow position: | chr23:27399195-27399716 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 301 |
| Conread position: | 95-607 |
| Cow position: | chr23:30636610-30636088 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 301 |
| Conread position: | 97-291 |
| Cow position: | chr23:31595483-31595288 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 25, 7 |
| Conread position: | 97-362 |
| Cow position: | chr23:8980795-8980530 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 97-605 |
| Cow position: | chr23:5875078-5874571 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 97-607 |
| Cow position: | chr23:988947-988435 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 304 |
| Conread position: | 97-607 |
| Cow position: | chr23:4276652-4277168 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 85 |
| Conread position: | 97-607 |
| Cow position: | chr23:7273354-7273844 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 62 |
| Conread position: | 98-607 |
| Cow position: | chr23:22147562-22147037 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 99-607 |
| Cow position: | chr23:36031671-36031160 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 103-332 |
| Cow position: | chr23:2765673-2765449 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 110-595 |
| Cow position: | chr23:1025343-1024863 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 15 |
| Conread position: | 111-602 |
| Cow position: | chr23:15176782-15177281 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 290 |
| Conread position: | 111-607 |
| Cow position: | chr23:4640917-4640411 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 291 |
| Conread position: | 111-607 |
| Cow position: | chr23:11778193-11778701 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 220 |
| Conread position: | 116-347 |
| Cow position: | chr23:7750105-7750338 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 130-529 |
| Cow position: | chr23:2340131-2340530 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 115 |
| Conread position: | 130-607 |
| Cow position: | chr23:4888409-4888886 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 258 |
| Conread position: | 131-607 |
| Cow position: | chr23:2757310-2757807 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 37 |
| Conread position: | 154-590 |
| Cow position: | chr23:22945309-22944876 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 160, 140 |
| Conread position: | 159-384 |
| Cow position: | chr23:31652107-31651889 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 134, 36 |
| Conread position: | 162-605 |
| Cow position: | chr23:2524435-2523986 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 236 |
| Conread position: | 181-607 |
| Cow position: | chr23:14965967-14965539 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 218 |
| Conread position: | 184-599 |
| Cow position: | chr23:3013429-3013851 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 45 |
| Conread position: | 185-607 |
| Cow position: | chr23:20156450-20156002 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 230 |
| Conread position: | 189-607 |
| Cow position: | chr23:14974776-14974350 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 212 |
| Conread position: | 210-606 |
| Cow position: | chr23:38578100-38578487 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 211-605 |
| Cow position: | chr23:6216384-6216781 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 160 |
| Conread position: | 214-604 |
| Cow position: | chr23:26836117-26836484 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 80, 94 |
| Conread position: | 229-607 |
| Cow position: | chr23:25684231-25683850 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 19 |
| Conread position: | 258-607 |
| Cow position: | chr23:2716259-2716601 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 264-607 |
| Cow position: | chr23:31591946-31591589 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 62 |
| Conread position: | 269-583 |
| Cow position: | chr23:29474686-29474368 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 117 |
| Conread position: | 289-607 |
| Cow position: | chr23:1327571-1327261 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 91, 147 |
| Conread position: | 353-605 |
| Cow position: | chr23:31595278-31595025 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 353-616 |
| Cow position: | chr23:19450217-19450473 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 358-609 |
| Cow position: | chr23:10903493-10903751 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 371-521 |
| Cow position: | chr23:31651576-31651433 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 20 |
| Conread position: | 372-590 |
| Cow position: | chr23:36211150-36210926 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 387-601 |
| Cow position: | chr23:8980318-8980114 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 408-605 |
| Cow position: | chr23:2782419-2782225 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 8, 37 |
| Conread position: | 415-607 |
| Cow position: | chr23:16615975-16615786 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 46, 6 |
| Conread position: | 416-607 |
| Cow position: | chr23:29452297-29452105 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 445-607 |
| Cow position: | chr23:2765403-2765240 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
Show alignments to all cow chromosomes.