Cow genome map

Conread name: Ss1.1-Pig4-TMW8047O02.5

Conread position: 1-88
Cow position: chr24:6440134-6440047 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr24:11150740-11150827 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr24:17454749-17454836 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr24:18212748-18212661 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 4-88
Cow position: chr24:36724443-36724359 (view UCSC Genome Browser custom track)
Alignm length: 85
Alignm identity: 74
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 79-345
Cow position: chr24:13021433-13021699 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 191
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 52, 111

Conread position: 79-466
Cow position: chr24:2635881-2636275 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 323

Conread position: 79-607
Cow position: chr24:22792938-22793471 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 111

Conread position: 79-607
Cow position: chr24:44017307-44017845 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 323

Conread position: 84-605
Cow position: chr24:6351957-6352481 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 224

Conread position: 84-607
Cow position: chr24:13187955-13188472 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 5

Conread position: 87-604
Cow position: chr24:12568024-12568523 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 24

Conread position: 89-430
Cow position: chr24:36296945-36297280 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 224
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 204, 26

Conread position: 91-408
Cow position: chr24:12288948-12288630 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 20

Conread position: 91-477
Cow position: chr24:17187317-17187709 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 185

Conread position: 91-523
Cow position: chr24:38635519-38635969 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 13

Conread position: 92-607
Cow position: chr24:12114261-12113748 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 100

Conread position: 92-607
Cow position: chr24:14384837-14384316 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 119

Conread position: 92-607
Cow position: chr24:15392529-15392041 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 70

Conread position: 92-608
Cow position: chr24:12236832-12237354 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 19

Conread position: 93-603
Cow position: chr24:35841839-35841328 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 169

Conread position: 93-603
Cow position: chr24:37321824-37321316 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 322
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 41, 55

Conread position: 94-465
Cow position: chr24:6645194-6645570 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 96

Conread position: 94-466
Cow position: chr24:7060880-7061258 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 17

Conread position: 94-589
Cow position: chr24:6537338-6537822 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 104

Conread position: 94-596
Cow position: chr24:12797984-12797480 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 100

Conread position: 94-605
Cow position: chr24:6025320-6024801 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 303

Conread position: 94-605
Cow position: chr24:14885462-14884957 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 93

Conread position: 94-605
Cow position: chr24:36707636-36708143 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 90

Conread position: 94-607
Cow position: chr24:4415748-4415230 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 140

Conread position: 94-607
Cow position: chr24:6083793-6084316 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 307

Conread position: 94-607
Cow position: chr24:6434017-6434539 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 308

Conread position: 94-607
Cow position: chr24:8029927-8030450 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 308

Conread position: 94-607
Cow position: chr24:9188955-9188433 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 308

Conread position: 94-607
Cow position: chr24:12485541-12485018 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 308

Conread position: 94-607
Cow position: chr24:16649521-16649018 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 10

Conread position: 94-607
Cow position: chr24:33739566-33739041 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 199, 314

Conread position: 94-607
Cow position: chr24:35838848-35838321 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 21

Conread position: 95-528
Cow position: chr24:14390944-14390511 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 87

Conread position: 95-564
Cow position: chr24:12161656-12162130 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 57

Conread position: 95-607
Cow position: chr24:6145137-6145667 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 67

Conread position: 95-607
Cow position: chr24:12085977-12086497 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 76

Conread position: 95-608
Cow position: chr24:6335472-6335982 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 169

Conread position: 97-415
Cow position: chr24:13531755-13531430 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 93

Conread position: 97-605
Cow position: chr24:14873563-14873053 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 176

Conread position: 98-526
Cow position: chr24:39678212-39678627 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 107

Conread position: 98-607
Cow position: chr24:33933150-33933665 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 13

Conread position: 99-607
Cow position: chr24:19833167-19833684 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 12

Conread position: 100-555
Cow position: chr24:12131704-12131239 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 118

Conread position: 104-310
Cow position: chr24:12207927-12208128 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 58

Conread position: 104-601
Cow position: chr24:12939994-12940486 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 326
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 37, 136

Conread position: 106-602
Cow position: chr24:1447358-1447848 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 80

Conread position: 110-528
Cow position: chr24:6048049-6048478 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 278
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 76

Conread position: 111-607
Cow position: chr24:16084867-16084360 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 285

Conread position: 141-301
Cow position: chr24:30117315-30117476 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 116
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 152, 30

Conread position: 151-563
Cow position: chr24:6515209-6514790 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 277
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 8, 15

Conread position: 157-578
Cow position: chr24:17303755-17303342 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 283
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 185, 81

Conread position: 159-608
Cow position: chr24:36560240-36559787 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 238

Conread position: 162-373
Cow position: chr24:14282758-14282550 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 128, 29

Conread position: 162-599
Cow position: chr24:22951982-22952427 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 237

Conread position: 162-607
Cow position: chr24:14584940-14585375 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 115

Conread position: 168-607
Cow position: chr24:148763-148320 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 94

Conread position: 170-607
Cow position: chr24:9092419-9091986 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 213

Conread position: 180-607
Cow position: chr24:40548738-40549173 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 224

Conread position: 193-607
Cow position: chr24:12335915-12335475 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 199-438
Cow position: chr24:35987464-35987228 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 10

Conread position: 210-521
Cow position: chr24:40654283-40654599 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 231
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 62

Conread position: 231-607
Cow position: chr24:37216919-37217298 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 163

Conread position: 243-451
Cow position: chr24:14333027-14333241 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 155

Conread position: 256-602
Cow position: chr24:6660668-6660305 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 143

Conread position: 296-607
Cow position: chr24:17696985-17696679 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 18

Conread position: 328-605
Cow position: chr24:12146116-12145834 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 187
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 59

Conread position: 330-604
Cow position: chr24:14300858-14301139 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 194
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 130, 63

Conread position: 342-599
Cow position: chr24:13524139-13524395 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 50

Conread position: 353-601
Cow position: chr24:7091550-7091301 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 181
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 114, 32

Conread position: 359-607
Cow position: chr24:29187334-29187582 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 32

Conread position: 371-602
Cow position: chr24:1438120-1437894 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 163
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 86, 21

Conread position: 397-601
Cow position: chr24:12288307-12288098 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 162
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 62, 144

Conread position: 418-594
Cow position: chr24:6510723-6510546 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 434-607
Cow position: chr24:6645827-6646002 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 141
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 0

Conread position: 459-607
Cow position: chr24:7061540-7061688 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 483-607
Cow position: chr24:5993054-5992930 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.