Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047O02.5 |
| Conread position: | 79-509 |
| Cow position: | chr25:33991337-33990902 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 79-607 |
| Cow position: | chr25:35362701-35362174 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 84-607 |
| Cow position: | chr25:17589826-17589299 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 84-607 |
| Cow position: | chr25:32579700-32580220 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 5 |
| Conread position: | 87-604 |
| Cow position: | chr25:20494088-20494601 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 343 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 53, 91 |
| Conread position: | 87-605 |
| Cow position: | chr25:18255630-18255119 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 100 |
| Conread position: | 87-607 |
| Cow position: | chr25:12759867-12759344 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 90-362 |
| Cow position: | chr25:18411559-18411284 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 91-585 |
| Cow position: | chr25:36240276-36240789 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 105 |
| Conread position: | 91-607 |
| Cow position: | chr25:25506378-25506904 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 307 |
| Conread position: | 91-607 |
| Cow position: | chr25:34347263-34346762 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 57 |
| Conread position: | 92-374 |
| Cow position: | chr25:18302509-18302806 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 92-606 |
| Cow position: | chr25:19916817-19917338 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 93-605 |
| Cow position: | chr25:20777168-20776649 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 184 |
| Conread position: | 93-608 |
| Cow position: | chr25:24218379-24217864 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 306 |
| Conread position: | 94-389 |
| Cow position: | chr25:24171763-24172057 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 94-598 |
| Cow position: | chr25:18421379-18421915 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 354 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 45, 149 |
| Conread position: | 94-601 |
| Cow position: | chr25:18092752-18093259 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 161 |
| Conread position: | 94-605 |
| Cow position: | chr25:19288611-19288093 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 359 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 94-607 |
| Cow position: | chr25:26921964-26922472 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 131 |
| Conread position: | 95-601 |
| Cow position: | chr25:18276090-18275579 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 95-607 |
| Cow position: | chr25:8674649-8675171 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 306 |
| Conread position: | 95-607 |
| Cow position: | chr25:13780770-13781285 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 95-607 |
| Cow position: | chr25:18890281-18889760 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 301 |
| Conread position: | 95-607 |
| Cow position: | chr25:20629311-20629821 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 306 |
| Conread position: | 95-607 |
| Cow position: | chr25:22147229-22147750 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 69 |
| Conread position: | 95-607 |
| Cow position: | chr25:26279000-26279514 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 150 |
| Conread position: | 97-607 |
| Cow position: | chr25:11375610-11375093 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 110 |
| Conread position: | 97-607 |
| Cow position: | chr25:14015913-14016420 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 97-607 |
| Cow position: | chr25:34656709-34656191 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 291 |
| Conread position: | 98-607 |
| Cow position: | chr25:11933785-11933276 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 53 |
| Conread position: | 102-607 |
| Cow position: | chr25:17468952-17468446 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 60 |
| Conread position: | 104-320 |
| Cow position: | chr25:17563170-17562958 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 104-480 |
| Cow position: | chr25:17560861-17560477 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 105-608 |
| Cow position: | chr25:28030873-28030362 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 106-607 |
| Cow position: | chr25:33243601-33244075 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 111-605 |
| Cow position: | chr25:18027879-18027372 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 294 |
| Conread position: | 111-607 |
| Cow position: | chr25:18060836-18060347 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 289 |
| Conread position: | 167-419 |
| Cow position: | chr25:18173168-18173429 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 229 |
| Conread position: | 190-557 |
| Cow position: | chr25:39560452-39560093 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 22, 5 |
| Conread position: | 211-607 |
| Cow position: | chr25:12942849-12942445 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 188 |
| Conread position: | 250-604 |
| Cow position: | chr25:23345449-23345085 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 149 |
| Conread position: | 254-608 |
| Cow position: | chr25:33665974-33665617 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 150 |
| Conread position: | 287-560 |
| Cow position: | chr25:536863-536597 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 172, 17 |
| Conread position: | 289-607 |
| Cow position: | chr25:27022635-27022311 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 108 |
| Conread position: | 358-607 |
| Cow position: | chr25:18195092-18194843 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 33 |
| Conread position: | 384-607 |
| Cow position: | chr25:18303432-18303655 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 74, 183 |
| Conread position: | 388-607 |
| Cow position: | chr25:9544100-9544316 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 399-607 |
| Cow position: | chr25:34014443-34014233 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 147 |
| Conread position: | 489-607 |
| Cow position: | chr25:17560496-17560377 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.