Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047O02.5 |
| Conread position: | 1-88 |
| Cow position: | chr26:21824314-21824401 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr26:30754054-30754141 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr26:34014033-34013946 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-607 |
| Cow position: | chr26:15145019-15144484 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 79-607 |
| Cow position: | chr26:3031070-3030553 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 79-607 |
| Cow position: | chr26:11254319-11253780 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 324 |
| Conread position: | 84-605 |
| Cow position: | chr26:8283299-8282789 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 107 |
| Conread position: | 84-607 |
| Cow position: | chr26:2352613-2352084 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 84-607 |
| Cow position: | chr26:18854833-18855364 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 84-608 |
| Cow position: | chr26:2198372-2198903 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 86-607 |
| Cow position: | chr26:17397187-17396655 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 95 |
| Conread position: | 91-607 |
| Cow position: | chr26:4605431-4604912 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 309 |
| Conread position: | 92-335 |
| Cow position: | chr26:9112220-9112465 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 45, 19 |
| Conread position: | 92-524 |
| Cow position: | chr26:20254825-20255247 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 92-560 |
| Cow position: | chr26:16904532-16905001 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 92-607 |
| Cow position: | chr26:12588814-12588289 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 311 |
| Conread position: | 93-605 |
| Cow position: | chr26:20262602-20263126 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 94-602 |
| Cow position: | chr26:3691561-3692068 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 68 |
| Conread position: | 94-605 |
| Cow position: | chr26:8869631-8870156 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 221 |
| Conread position: | 95-359 |
| Cow position: | chr26:23605144-23604878 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 95-448 |
| Cow position: | chr26:11537078-11536720 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 95-607 |
| Cow position: | chr26:5674922-5675435 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 129 |
| Conread position: | 95-607 |
| Cow position: | chr26:9563603-9563082 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 306 |
| Conread position: | 95-607 |
| Cow position: | chr26:19351758-19351238 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 299 |
| Conread position: | 96-607 |
| Cow position: | chr26:12574637-12574133 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 99-400 |
| Cow position: | chr26:3074286-3074591 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 104-565 |
| Cow position: | chr26:29093197-29092742 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 32 |
| Conread position: | 106-385 |
| Cow position: | chr26:12665738-12666020 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 25, 165 |
| Conread position: | 108-366 |
| Cow position: | chr26:28423929-28423668 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 111-602 |
| Cow position: | chr26:30782539-30783014 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 79 |
| Conread position: | 111-607 |
| Cow position: | chr26:30589592-30589096 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 16 |
| Conread position: | 141-317 |
| Cow position: | chr26:6602009-6602188 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 161-307 |
| Cow position: | chr26:9854268-9854118 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 44, 5 |
| Conread position: | 167-307 |
| Cow position: | chr26:9850797-9850652 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 177-607 |
| Cow position: | chr26:12656134-12656548 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 32 |
| Conread position: | 192-368 |
| Cow position: | chr26:12659836-12659658 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 195-401 |
| Cow position: | chr26:9845755-9845542 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 225-421 |
| Cow position: | chr26:21350263-21350465 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 300-607 |
| Cow position: | chr26:8918814-8919126 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 14 |
| Conread position: | 329-608 |
| Cow position: | chr26:9845579-9845301 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 334-605 |
| Cow position: | chr26:12666105-12666377 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 43, 220 |
| Conread position: | 336-607 |
| Cow position: | chr26:6849427-6849161 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 22 |
| Conread position: | 345-607 |
| Cow position: | chr26:18852234-18852495 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 46 |
| Conread position: | 354-607 |
| Cow position: | chr26:9849900-9849650 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 354-607 |
| Cow position: | chr26:9853410-9853161 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 358-602 |
| Cow position: | chr26:1602177-1601923 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 141 |
| Conread position: | 358-605 |
| Cow position: | chr26:23603739-23603493 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 33 |
| Conread position: | 358-607 |
| Cow position: | chr26:9112765-9113014 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 34 |
| Conread position: | 365-516 |
| Cow position: | chr26:4806507-4806357 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 27 |
| Conread position: | 367-584 |
| Cow position: | chr26:4334181-4334398 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 25 |
| Conread position: | 385-593 |
| Cow position: | chr26:6488267-6488062 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 85 |
Show alignments to all cow chromosomes.