Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047O02.5 |
| Conread position: | 1-88 |
| Cow position: | chr27:4802897-4802984 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-89 |
| Cow position: | chr27:25059432-25059344 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 78 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-93 |
| Cow position: | chr27:20980864-20980772 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 78 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-546 |
| Cow position: | chr27:25160374-25160845 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 87-524 |
| Cow position: | chr27:28890415-28890855 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 87-557 |
| Cow position: | chr27:5906717-5907215 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 334 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 93-608 |
| Cow position: | chr27:26556289-26555790 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 94-602 |
| Cow position: | chr27:2364442-2364958 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 221 |
| Conread position: | 94-607 |
| Cow position: | chr27:1209039-1209564 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 310 |
| Conread position: | 94-607 |
| Cow position: | chr27:15541019-15541542 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 308 |
| Conread position: | 94-607 |
| Cow position: | chr27:16034701-16034181 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 307 |
| Conread position: | 94-607 |
| Cow position: | chr27:25002835-25002323 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 95-440 |
| Cow position: | chr27:3996685-3996330 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 22, 98 |
| Conread position: | 95-605 |
| Cow position: | chr27:25805189-25804685 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 170 |
| Conread position: | 95-605 |
| Cow position: | chr27:26226992-26227499 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 93 |
| Conread position: | 95-607 |
| Cow position: | chr27:892904-893420 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 67 |
| Conread position: | 95-607 |
| Cow position: | chr27:14460764-14460243 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 17 |
| Conread position: | 95-607 |
| Cow position: | chr27:23334855-23335392 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 299 |
| Conread position: | 95-607 |
| Cow position: | chr27:26324506-26325028 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 306 |
| Conread position: | 95-607 |
| Cow position: | chr27:27662586-27663108 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 306 |
| Conread position: | 97-302 |
| Cow position: | chr27:25116940-25117146 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 43, 62 |
| Conread position: | 97-444 |
| Cow position: | chr27:25999361-25999018 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 97-605 |
| Cow position: | chr27:15278371-15277862 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 213 |
| Conread position: | 97-607 |
| Cow position: | chr27:16439023-16439541 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 90 |
| Conread position: | 97-607 |
| Cow position: | chr27:27051358-27051897 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 68 |
| Conread position: | 111-607 |
| Cow position: | chr27:5910575-5911076 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 111-607 |
| Cow position: | chr27:9993493-9992990 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 141-317 |
| Cow position: | chr27:27197826-27197656 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 143-523 |
| Cow position: | chr27:6006768-6007152 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 131, 43 |
| Conread position: | 260-608 |
| Cow position: | chr27:22316442-22316797 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 28, 230 |
| Conread position: | 272-606 |
| Cow position: | chr27:16432295-16432628 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 44 |
| Conread position: | 277-607 |
| Cow position: | chr27:27753321-27752983 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 122 |
| Conread position: | 305-578 |
| Cow position: | chr27:27197466-27197194 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 18, 94 |
| Conread position: | 334-605 |
| Cow position: | chr27:26035115-26034845 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 124, 51 |
| Conread position: | 358-607 |
| Cow position: | chr27:15638391-15638144 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 33 |
| Conread position: | 421-607 |
| Cow position: | chr27:8561572-8561754 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 483-607 |
| Cow position: | chr27:28078537-28078660 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 28, 60 |
Show alignments to all cow chromosomes.