Cow genome map

Conread name: Ss1.1-Pig4-TMW8047O02.5

Conread position: 1-88
Cow position: chr29:10022020-10022107 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr29:15260684-15260771 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr29:39424833-39424920 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr29:40470721-40470634 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 3-89
Cow position: chr29:27260809-27260895 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 77
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 79-500
Cow position: chr29:28060980-28060548 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 324

Conread position: 79-538
Cow position: chr29:15969462-15968997 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 146

Conread position: 79-607
Cow position: chr29:15895162-15894627 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 111

Conread position: 81-366
Cow position: chr29:32640478-32640755 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 195
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 212, 5

Conread position: 84-401
Cow position: chr29:30108792-30109099 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 216
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 53, 109

Conread position: 84-466
Cow position: chr29:31180815-31181206 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 5

Conread position: 90-329
Cow position: chr29:13578117-13578356 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 141, 37

Conread position: 91-368
Cow position: chr29:12796768-12796495 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 205
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 20, 110

Conread position: 91-607
Cow position: chr29:15950480-15949968 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 20

Conread position: 91-607
Cow position: chr29:25932848-25932321 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 188

Conread position: 91-607
Cow position: chr29:45459415-45459939 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 101

Conread position: 92-563
Cow position: chr29:43366297-43365813 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 12

Conread position: 92-607
Cow position: chr29:5957300-5957827 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 7

Conread position: 93-317
Cow position: chr29:9855220-9854993 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 86

Conread position: 93-607
Cow position: chr29:104279-104790 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 82

Conread position: 93-607
Cow position: chr29:7840497-7841019 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 18

Conread position: 94-366
Cow position: chr29:31121509-31121782 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 189
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 199, 48

Conread position: 94-488
Cow position: chr29:21246270-21246674 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 9

Conread position: 94-510
Cow position: chr29:21427357-21426933 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 311

Conread position: 94-544
Cow position: chr29:16109429-16109887 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 85

Conread position: 94-548
Cow position: chr29:13853320-13852861 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 68

Conread position: 94-584
Cow position: chr29:32315741-32316241 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 308

Conread position: 94-607
Cow position: chr29:610910-610389 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 107

Conread position: 94-607
Cow position: chr29:23975534-23976063 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 94-607
Cow position: chr29:27250632-27250119 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 17

Conread position: 95-602
Cow position: chr29:2750681-2750203 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 34

Conread position: 95-606
Cow position: chr29:10648543-10648029 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 95

Conread position: 95-607
Cow position: chr29:48774-48257 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 298

Conread position: 95-607
Cow position: chr29:2099545-2100068 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 307

Conread position: 95-607
Cow position: chr29:2689607-2690123 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 104

Conread position: 95-607
Cow position: chr29:2841663-2841150 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 95

Conread position: 95-607
Cow position: chr29:6266790-6266278 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 288

Conread position: 95-607
Cow position: chr29:7431514-7430995 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 306

Conread position: 95-607
Cow position: chr29:19623542-19623024 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 76

Conread position: 95-607
Cow position: chr29:19652810-19653331 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 223

Conread position: 95-607
Cow position: chr29:20250861-20251382 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 300

Conread position: 95-607
Cow position: chr29:26165120-26164599 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 108

Conread position: 95-607
Cow position: chr29:32539513-32540033 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 16

Conread position: 95-607
Cow position: chr29:34800104-34799585 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 49

Conread position: 95-607
Cow position: chr29:38226696-38227203 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 95-607
Cow position: chr29:40503277-40502759 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 304

Conread position: 95-607
Cow position: chr29:43322261-43322778 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 306

Conread position: 95-610
Cow position: chr29:803622-803130 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 351
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 38, 20

Conread position: 96-397
Cow position: chr29:34609242-34608945 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 68

Conread position: 96-607
Cow position: chr29:10824258-10823746 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 68

Conread position: 96-607
Cow position: chr29:16022236-16022753 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 39

Conread position: 96-607
Cow position: chr29:35296583-35297097 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 15

Conread position: 96-607
Cow position: chr29:39080003-39079489 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 302

Conread position: 97-602
Cow position: chr29:27041056-27040551 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 95

Conread position: 97-605
Cow position: chr29:9644017-9643535 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 93

Conread position: 97-607
Cow position: chr29:10848413-10847869 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 313

Conread position: 97-607
Cow position: chr29:16769835-16770346 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 178

Conread position: 98-439
Cow position: chr29:2368192-2367855 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 233
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 53, 62

Conread position: 98-583
Cow position: chr29:30811244-30811727 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 24

Conread position: 98-605
Cow position: chr29:35196380-35196885 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 96

Conread position: 101-602
Cow position: chr29:1714957-1715459 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 86

Conread position: 103-502
Cow position: chr29:6471130-6471508 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 264
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 39, 91

Conread position: 103-607
Cow position: chr29:21543667-21543146 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 61

Conread position: 111-608
Cow position: chr29:14013193-14013688 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 13

Conread position: 111-608
Cow position: chr29:14073218-14072723 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 13

Conread position: 115-525
Cow position: chr29:4635240-4634835 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 272
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 179, 27

Conread position: 115-584
Cow position: chr29:19893487-19893973 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 306
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 22, 92

Conread position: 131-645
Cow position: chr29:17662661-17663166 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 187

Conread position: 133-546
Cow position: chr29:7855716-7856138 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 278
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 143, 42

Conread position: 136-605
Cow position: chr29:11049029-11049499 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 24

Conread position: 146-605
Cow position: chr29:11855354-11855823 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 307
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 147, 77

Conread position: 150-605
Cow position: chr29:16017377-16016932 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 305
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 61, 47

Conread position: 159-529
Cow position: chr29:24198852-24198474 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 255
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 60, 25

Conread position: 184-607
Cow position: chr29:27981119-27980694 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 7

Conread position: 209-605
Cow position: chr29:19884887-19885291 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 191

Conread position: 236-470
Cow position: chr29:5983335-5983094 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 185
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 124, 156

Conread position: 236-584
Cow position: chr29:11841511-11841862 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 241
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 127, 22

Conread position: 244-407
Cow position: chr29:43791033-43791202 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 49, 155

Conread position: 244-607
Cow position: chr29:14585780-14586145 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 155

Conread position: 258-563
Cow position: chr29:13648284-13648577 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 204
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 130

Conread position: 259-607
Cow position: chr29:670189-669834 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 141

Conread position: 259-607
Cow position: chr29:45587478-45587137 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 92

Conread position: 293-607
Cow position: chr29:18857041-18856721 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 105

Conread position: 303-607
Cow position: chr29:42650198-42650509 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 96

Conread position: 303-607
Cow position: chr29:42802058-42802369 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 96

Conread position: 325-616
Cow position: chr29:27845278-27845570 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 191
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 83

Conread position: 336-607
Cow position: chr29:13582023-13582291 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 56

Conread position: 353-581
Cow position: chr29:12796393-12796168 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 18

Conread position: 358-607
Cow position: chr29:2466362-2466111 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 33

Conread position: 358-608
Cow position: chr29:4056122-4056374 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 24, 6

Conread position: 361-607
Cow position: chr29:410548-410302 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 30

Conread position: 415-605
Cow position: chr29:34925504-34925700 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 40, 0

Conread position: 460-607
Cow position: chr29:31181492-31181638 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 476-596
Cow position: chr29:21426932-21426812 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 103
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.