Cow genome map

Conread name: Ss1.1-Pig4-TMW8047O02.5

Conread position: 1-88
Cow position: chr4:15459380-15459467 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr4:15460234-15460321 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr4:33021602-33021689 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 77
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr4:35306779-35306866 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1-88
Cow position: chr4:58622501-58622588 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 79-284
Cow position: chr4:9311645-9311852 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 147
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 79-366
Cow position: chr4:23114768-23114477 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 52, 0

Conread position: 79-607
Cow position: chr4:13547436-13547975 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 324

Conread position: 79-607
Cow position: chr4:65224126-65223588 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 323

Conread position: 84-557
Cow position: chr4:22028028-22027537 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 305
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 35, 131

Conread position: 84-605
Cow position: chr4:6269214-6268686 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 5

Conread position: 84-605
Cow position: chr4:40824834-40824309 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 129

Conread position: 84-607
Cow position: chr4:5879592-5880111 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 5

Conread position: 87-604
Cow position: chr4:4175861-4176372 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 11

Conread position: 88-607
Cow position: chr4:46663619-46664137 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 108

Conread position: 91-596
Cow position: chr4:17530994-17530495 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 326
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 46, 116

Conread position: 91-607
Cow position: chr4:12241802-12241272 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 313

Conread position: 91-609
Cow position: chr4:21338562-21338055 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 53

Conread position: 92-316
Cow position: chr4:27442509-27442739 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 172
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 23, 0

Conread position: 92-607
Cow position: chr4:1464500-1463979 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 86

Conread position: 92-608
Cow position: chr4:28830458-28830976 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 239

Conread position: 94-577
Cow position: chr4:528416-528909 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 308

Conread position: 94-601
Cow position: chr4:30308029-30307519 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 17

Conread position: 94-605
Cow position: chr4:39272515-39271993 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 10

Conread position: 94-607
Cow position: chr4:101506-100987 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 304

Conread position: 94-607
Cow position: chr4:602420-602939 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 96

Conread position: 94-607
Cow position: chr4:1931197-1930678 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 170

Conread position: 94-607
Cow position: chr4:3125204-3125741 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 307

Conread position: 94-607
Cow position: chr4:18425095-18424579 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 97

Conread position: 94-607
Cow position: chr4:32211590-32212113 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 308

Conread position: 94-607
Cow position: chr4:47764747-47764225 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 224

Conread position: 95-400
Cow position: chr4:1050196-1049881 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 36, 302

Conread position: 95-519
Cow position: chr4:33493235-33493666 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 307

Conread position: 95-595
Cow position: chr4:36895798-36896301 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 301

Conread position: 95-606
Cow position: chr4:4905577-4906091 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 257

Conread position: 95-607
Cow position: chr4:3961019-3961537 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 104

Conread position: 95-607
Cow position: chr4:6490922-6490419 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 256

Conread position: 95-607
Cow position: chr4:13492000-13492521 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 301

Conread position: 95-607
Cow position: chr4:16359316-16359829 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 98

Conread position: 95-607
Cow position: chr4:17926830-17926309 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 88

Conread position: 95-607
Cow position: chr4:18516320-18516842 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 306

Conread position: 95-607
Cow position: chr4:41330864-41331384 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 303

Conread position: 95-607
Cow position: chr4:43320212-43319701 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 306

Conread position: 95-607
Cow position: chr4:43880534-43881054 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 9

Conread position: 95-607
Cow position: chr4:44724507-44725029 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 9

Conread position: 95-607
Cow position: chr4:45049871-45049353 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 67

Conread position: 95-624
Cow position: chr4:29532290-29531752 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 301

Conread position: 96-370
Cow position: chr4:10408206-10408485 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 96-430
Cow position: chr4:51044461-51044130 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 104

Conread position: 96-484
Cow position: chr4:31668738-31669132 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 91

Conread position: 96-607
Cow position: chr4:355336-355855 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 97

Conread position: 96-607
Cow position: chr4:24445778-24445261 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 70

Conread position: 96-607
Cow position: chr4:25600187-25599673 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 87

Conread position: 96-607
Cow position: chr4:34185429-34184938 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 27

Conread position: 97-322
Cow position: chr4:58883250-58883027 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 90

Conread position: 97-563
Cow position: chr4:496511-496056 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 18

Conread position: 97-607
Cow position: chr4:157942-158461 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 123

Conread position: 97-607
Cow position: chr4:66925431-66925942 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 64

Conread position: 98-346
Cow position: chr4:54190289-54190534 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 182
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 39, 88

Conread position: 99-583
Cow position: chr4:11393908-11393424 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 71

Conread position: 99-601
Cow position: chr4:1497319-1496819 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 12

Conread position: 100-435
Cow position: chr4:11383840-11384177 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 287

Conread position: 102-485
Cow position: chr4:1371579-1371180 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 92

Conread position: 104-607
Cow position: chr4:66179553-66179042 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 104

Conread position: 111-607
Cow position: chr4:16056047-16056547 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 79

Conread position: 111-607
Cow position: chr4:48025842-48026342 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 140

Conread position: 116-605
Cow position: chr4:8598686-8598215 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 52

Conread position: 123-584
Cow position: chr4:54157480-54157918 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 308
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 21, 93

Conread position: 127-360
Cow position: chr4:12608043-12607812 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 173
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 92, 19

Conread position: 136-560
Cow position: chr4:6215085-6214660 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 78

Conread position: 138-604
Cow position: chr4:969571-969100 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 115

Conread position: 144-335
Cow position: chr4:33630524-33630716 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 154-607
Cow position: chr4:26887358-26886919 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 0

Conread position: 159-585
Cow position: chr4:47718119-47717683 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 244

Conread position: 172-513
Cow position: chr4:21564654-21564971 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 244
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 18, 29

Conread position: 178-607
Cow position: chr4:57979140-57979573 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 221

Conread position: 179-503
Cow position: chr4:40406075-40405754 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 214
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 11, 144

Conread position: 179-605
Cow position: chr4:3829992-3830419 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 35

Conread position: 180-546
Cow position: chr4:24198686-24198329 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 245
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 27, 155

Conread position: 184-607
Cow position: chr4:33073582-33073164 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 167

Conread position: 190-604
Cow position: chr4:22471710-22472111 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 275
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 104, 78

Conread position: 190-608
Cow position: chr4:9101864-9102284 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 274
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 95, 7

Conread position: 195-607
Cow position: chr4:11618387-11618799 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 71

Conread position: 198-608
Cow position: chr4:62565516-62565925 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 173

Conread position: 199-607
Cow position: chr4:27332973-27333381 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 201

Conread position: 230-503
Cow position: chr4:30283224-30283492 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 189
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 90

Conread position: 258-606
Cow position: chr4:41119601-41119958 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 142

Conread position: 258-607
Cow position: chr4:60264975-60264622 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 138

Conread position: 286-553
Cow position: chr4:23493365-23493628 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 195
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 26, 15

Conread position: 299-608
Cow position: chr4:61109467-61109163 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 205
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 22, 27

Conread position: 311-557
Cow position: chr4:60673515-60673758 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 26, 85

Conread position: 358-607
Cow position: chr4:12586995-12587244 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 33

Conread position: 359-607
Cow position: chr4:9355073-9354825 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 33

Conread position: 364-605
Cow position: chr4:61256599-61256835 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 31

Conread position: 411-574
Cow position: chr4:27443203-27443370 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 417-607
Cow position: chr4:9587018-9587209 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 41, 0

Conread position: 421-599
Cow position: chr4:11384717-11384893 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 9, 142

Conread position: 462-607
Cow position: chr4:10408478-10408619 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 102, 54

Conread position: 464-607
Cow position: chr4:4415885-4416028 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 495-607
Cow position: chr4:41954307-41954420 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 90
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 495-607
Cow position: chr4:41957962-41958075 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 20, 0

Show alignments to all cow chromosomes.