Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8047O02.5 |
| Conread position: | 1-88 |
| Cow position: | chr5:9056788-9056701 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr5:11923001-11923088 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr5:13407724-13407637 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr5:29031398-29031311 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr5:40130465-40130552 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-88 |
| Cow position: | chr5:50390979-50391066 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-93 |
| Cow position: | chr5:12680691-12680783 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 77-607 |
| Cow position: | chr5:4019697-4019158 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 9 |
| Conread position: | 79-280 |
| Cow position: | chr5:37755636-37755433 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 79-312 |
| Cow position: | chr5:59144284-59144521 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 79-524 |
| Cow position: | chr5:18665464-18665919 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 323 |
| Conread position: | 79-607 |
| Cow position: | chr5:24576416-24576955 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 32 |
| Conread position: | 79-607 |
| Cow position: | chr5:26079716-26079178 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 323 |
| Conread position: | 79-607 |
| Cow position: | chr5:27652488-27651942 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 79-607 |
| Cow position: | chr5:29042014-29042551 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 323 |
| Conread position: | 79-607 |
| Cow position: | chr5:48468772-48468239 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 321 |
| Conread position: | 79-607 |
| Cow position: | chr5:59481758-59482293 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 321 |
| Conread position: | 84-584 |
| Cow position: | chr5:3963979-3964481 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 84-605 |
| Cow position: | chr5:14346869-14346341 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 63 |
| Conread position: | 84-605 |
| Cow position: | chr5:14379671-14380201 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 84-607 |
| Cow position: | chr5:2530776-2531311 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 320 |
| Conread position: | 84-607 |
| Cow position: | chr5:46775594-46776120 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 90-265 |
| Cow position: | chr5:6519403-6519577 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 32, 102 |
| Conread position: | 90-607 |
| Cow position: | chr5:9686901-9686387 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 224 |
| Conread position: | 90-608 |
| Cow position: | chr5:14659586-14659062 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 91-248 |
| Cow position: | chr5:58747404-58747558 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 91-448 |
| Cow position: | chr5:49101148-49101498 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 91-585 |
| Cow position: | chr5:46659236-46659733 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 100 |
| Conread position: | 91-597 |
| Cow position: | chr5:41551415-41550896 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 198 |
| Conread position: | 91-607 |
| Cow position: | chr5:28031001-28031517 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 91-607 |
| Cow position: | chr5:32733730-32733212 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 179 |
| Conread position: | 91-607 |
| Cow position: | chr5:46663513-46664043 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 137 |
| Conread position: | 91-607 |
| Cow position: | chr5:49181799-49182309 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 36 |
| Conread position: | 91-608 |
| Cow position: | chr5:28006725-28007231 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 91-608 |
| Cow position: | chr5:49593946-49593414 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 229 |
| Conread position: | 92-339 |
| Cow position: | chr5:76124034-76123785 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 6, 20 |
| Conread position: | 92-476 |
| Cow position: | chr5:46005867-46005467 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 92-604 |
| Cow position: | chr5:416210-415682 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 85 |
| Conread position: | 92-607 |
| Cow position: | chr5:29008873-29009393 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 265 |
| Conread position: | 92-607 |
| Cow position: | chr5:45182586-45182063 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 92-607 |
| Cow position: | chr5:55627520-55628026 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 93-284 |
| Cow position: | chr5:34167585-34167769 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 89 |
| Conread position: | 93-424 |
| Cow position: | chr5:12681991-12681658 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 42, 88 |
| Conread position: | 93-525 |
| Cow position: | chr5:26054282-26054717 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 291 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 18, 155 |
| Conread position: | 94-360 |
| Cow position: | chr5:35299581-35299850 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 37, 260 |
| Conread position: | 94-408 |
| Cow position: | chr5:51771827-51771508 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 94-457 |
| Cow position: | chr5:10844357-10843985 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 302 |
| Conread position: | 94-463 |
| Cow position: | chr5:23227778-23228151 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 94-489 |
| Cow position: | chr5:53714774-53715176 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 96 |
| Conread position: | 94-509 |
| Cow position: | chr5:56858179-56857763 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 276 |
| Conread position: | 94-583 |
| Cow position: | chr5:26090306-26089815 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 17 |
| Conread position: | 94-601 |
| Cow position: | chr5:54932700-54932184 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 307 |
| Conread position: | 94-605 |
| Cow position: | chr5:46630907-46630403 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 169 |
| Conread position: | 94-607 |
| Cow position: | chr5:10776735-10776224 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 173 |
| Conread position: | 94-607 |
| Cow position: | chr5:27909750-27909232 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 94-607 |
| Cow position: | chr5:31706092-31706614 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 308 |
| Conread position: | 94-607 |
| Cow position: | chr5:32771999-32772522 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 308 |
| Conread position: | 94-607 |
| Cow position: | chr5:39165273-39164760 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 17 |
| Conread position: | 94-607 |
| Cow position: | chr5:44459000-44459523 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 308 |
| Conread position: | 94-607 |
| Cow position: | chr5:57483029-57482506 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 302 |
| Conread position: | 94-607 |
| Cow position: | chr5:58195519-58196042 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 152 |
| Conread position: | 94-607 |
| Cow position: | chr5:59060138-59060658 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 100 |
| Conread position: | 94-609 |
| Cow position: | chr5:41933290-41932788 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 330 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 69 |
| Conread position: | 95-320 |
| Cow position: | chr5:23716426-23716201 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 36, 56 |
| Conread position: | 95-359 |
| Cow position: | chr5:12644352-12644100 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 88 |
| Conread position: | 95-424 |
| Cow position: | chr5:4384748-4385075 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 95-433 |
| Cow position: | chr5:28570213-28570555 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 95-508 |
| Cow position: | chr5:7273385-7273793 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 94 |
| Conread position: | 95-601 |
| Cow position: | chr5:59845266-59844768 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 321 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 95-602 |
| Cow position: | chr5:34696103-34696637 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 304 |
| Conread position: | 95-605 |
| Cow position: | chr5:30578841-30579360 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 95-607 |
| Cow position: | chr5:1342277-1341758 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 9 |
| Conread position: | 95-607 |
| Cow position: | chr5:2430613-2430092 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 95-607 |
| Cow position: | chr5:2913969-2914489 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 497 |
| Conread position: | 95-607 |
| Cow position: | chr5:3785330-3785825 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 95-607 |
| Cow position: | chr5:10918316-10918838 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 95-607 |
| Cow position: | chr5:32945399-32945914 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 95-607 |
| Cow position: | chr5:46644228-46644727 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 95-607 |
| Cow position: | chr5:46739066-46738545 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 305 |
| Conread position: | 95-607 |
| Cow position: | chr5:48809195-48808675 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 96 |
| Conread position: | 95-607 |
| Cow position: | chr5:49119759-49119241 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 95 |
| Conread position: | 95-607 |
| Cow position: | chr5:54793099-54792595 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 311 |
| Conread position: | 95-607 |
| Cow position: | chr5:64782498-64781978 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 305 |
| Conread position: | 95-608 |
| Cow position: | chr5:41530051-41529552 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 96-289 |
| Cow position: | chr5:59282278-59282477 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 96-509 |
| Cow position: | chr5:6188093-6188503 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 96-607 |
| Cow position: | chr5:6158678-6158158 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 303 |
| Conread position: | 97-605 |
| Cow position: | chr5:26769334-26769842 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 51 |
| Conread position: | 97-605 |
| Cow position: | chr5:45699801-45700304 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 151 |
| Conread position: | 97-605 |
| Cow position: | chr5:61273647-61273149 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 95 |
| Conread position: | 97-607 |
| Cow position: | chr5:34202468-34202975 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 79 |
| Conread position: | 99-607 |
| Cow position: | chr5:24329822-24330314 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 96 |
| Conread position: | 100-366 |
| Cow position: | chr5:27488545-27488813 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 19, 59 |
| Conread position: | 101-270 |
| Cow position: | chr5:12185184-12185356 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 101-607 |
| Cow position: | chr5:3504723-3504210 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 297 |
| Conread position: | 102-607 |
| Cow position: | chr5:47831580-47831073 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 295 |
| Conread position: | 103-414 |
| Cow position: | chr5:27569678-27570000 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 303 |
| Conread position: | 103-607 |
| Cow position: | chr5:32674206-32673700 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 27 |
| Conread position: | 111-256 |
| Cow position: | chr5:57976885-57977036 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 111-281 |
| Cow position: | chr5:52804869-52805041 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 17, 148 |
| Conread position: | 111-607 |
| Cow position: | chr5:4068525-4069028 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 149 |
| Conread position: | 111-607 |
| Cow position: | chr5:24098182-24098689 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 291 |
| Conread position: | 111-607 |
| Cow position: | chr5:31102062-31101572 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 275 |
| Conread position: | 111-607 |
| Cow position: | chr5:37731880-37732386 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 290 |
| Conread position: | 112-477 |
| Cow position: | chr5:27683222-27682860 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 115-316 |
| Cow position: | chr5:29123257-29123058 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 70 |
| Conread position: | 115-601 |
| Cow position: | chr5:51162454-51162932 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 71 |
| Conread position: | 122-608 |
| Cow position: | chr5:47073457-47073942 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 329 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 130-545 |
| Cow position: | chr5:25207183-25206762 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 30 |
| Conread position: | 136-607 |
| Cow position: | chr5:49518228-49518698 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 52 |
| Conread position: | 138-483 |
| Cow position: | chr5:7811983-7811638 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 155, 38 |
| Conread position: | 138-604 |
| Cow position: | chr5:28022731-28023190 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 305 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 22, 15 |
| Conread position: | 138-605 |
| Cow position: | chr5:61020276-61019811 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 52 |
| Conread position: | 138-608 |
| Cow position: | chr5:26508008-26508477 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 149, 329 |
| Conread position: | 139-605 |
| Cow position: | chr5:53627189-53626724 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 17 |
| Conread position: | 140-526 |
| Cow position: | chr5:16104198-16103819 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 145-605 |
| Cow position: | chr5:49128811-49129258 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 12 |
| Conread position: | 159-372 |
| Cow position: | chr5:23767883-23768092 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 160, 113 |
| Conread position: | 159-534 |
| Cow position: | chr5:57366432-57366057 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 136, 32 |
| Conread position: | 176-604 |
| Cow position: | chr5:39872022-39872438 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 286 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 180-496 |
| Cow position: | chr5:58061231-58060911 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 114, 101 |
| Conread position: | 181-399 |
| Cow position: | chr5:18653614-18653833 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 112, 140 |
| Conread position: | 184-468 |
| Cow position: | chr5:52609947-52610236 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 88, 76 |
| Conread position: | 192-593 |
| Cow position: | chr5:27038851-27039244 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 192-607 |
| Cow position: | chr5:6589404-6588980 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 208 |
| Conread position: | 192-607 |
| Cow position: | chr5:20972387-20972006 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 61 |
| Conread position: | 193-546 |
| Cow position: | chr5:55097090-55096733 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 103, 126 |
| Conread position: | 194-601 |
| Cow position: | chr5:51319618-51319213 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 282 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 6, 17 |
| Conread position: | 197-608 |
| Cow position: | chr5:41962612-41962197 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 79 |
| Conread position: | 199-551 |
| Cow position: | chr5:4088427-4088789 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 203 |
| Conread position: | 199-596 |
| Cow position: | chr5:28335207-28334796 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 203-605 |
| Cow position: | chr5:25001016-25000608 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 16 |
| Conread position: | 218-601 |
| Cow position: | chr5:58334940-58334561 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 161 |
| Conread position: | 230-608 |
| Cow position: | chr5:26069058-26068685 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 159 |
| Conread position: | 253-575 |
| Cow position: | chr5:58819956-58819626 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 147 |
| Conread position: | 260-604 |
| Cow position: | chr5:52433662-52434004 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 127 |
| Conread position: | 268-564 |
| Cow position: | chr5:5318063-5317760 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 131 |
| Conread position: | 292-523 |
| Cow position: | chr5:52805096-52805322 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 166, 41 |
| Conread position: | 301-598 |
| Cow position: | chr5:32249784-32250074 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 156, 13 |
| Conread position: | 334-605 |
| Cow position: | chr5:23755854-23755581 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 127, 44 |
| Conread position: | 340-526 |
| Cow position: | chr5:39247609-39247424 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 356-607 |
| Cow position: | chr5:27001399-27001647 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 358-681 |
| Cow position: | chr5:5786808-5786500 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 360-584 |
| Cow position: | chr5:24108798-24108573 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 27 |
| Conread position: | 360-607 |
| Cow position: | chr5:73489769-73489521 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 361-607 |
| Cow position: | chr5:57977052-57977298 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 183 |
| Conread position: | 364-570 |
| Cow position: | chr5:18653838-18654048 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 366-607 |
| Cow position: | chr5:29436169-29435926 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 95, 10 |
| Conread position: | 378-605 |
| Cow position: | chr5:27489059-27489285 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 13 |
| Conread position: | 405-607 |
| Cow position: | chr5:76123737-76123541 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 40 |
| Conread position: | 416-607 |
| Cow position: | chr5:12644090-12643902 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 419-608 |
| Cow position: | chr5:17774189-17773999 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 456-607 |
| Cow position: | chr5:27570002-27570152 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 464-607 |
| Cow position: | chr5:10843522-10843379 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 468-601 |
| Cow position: | chr5:27682843-27682710 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 483-607 |
| Cow position: | chr5:9042954-9043078 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 485-607 |
| Cow position: | chr5:23960397-23960275 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.