Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048C12.5 |
| Conread position: | 7-323 |
| Cow position: | chrX:4546260-4545955 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 27-120 |
| Cow position: | chrX:25261598-25261692 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 27-272 |
| Cow position: | chrX:37567197-37566969 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 29-179 |
| Cow position: | chrX:35985429-35985578 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 129 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 29-191 |
| Cow position: | chrX:27706969-27707139 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 109, 51 |
| Conread position: | 29-350 |
| Cow position: | chrX:21177275-21177580 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 29-372 |
| Cow position: | chrX:42404035-42403694 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 56 |
| Conread position: | 29-387 |
| Cow position: | chrX:40197639-40197989 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 91 |
| Conread position: | 29-419 |
| Cow position: | chrX:6464003-6464392 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 125 |
| Conread position: | 29-425 |
| Cow position: | chrX:36923766-36924154 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 103 |
| Conread position: | 29-428 |
| Cow position: | chrX:36270942-36271331 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 220, 95 |
| Conread position: | 29-428 |
| Cow position: | chrX:39428447-39428048 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 116 |
| Conread position: | 29-429 |
| Cow position: | chrX:39863106-39862713 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 130 |
| Conread position: | 29-495 |
| Cow position: | chrX:25711092-25710619 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 133 |
| Conread position: | 30-369 |
| Cow position: | chrX:38526491-38526818 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 30-428 |
| Cow position: | chrX:16489591-16489186 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 32-428 |
| Cow position: | chrX:5117677-5117282 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 196 |
| Conread position: | 34-431 |
| Cow position: | chrX:38546100-38546478 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 31 |
| Conread position: | 35-480 |
| Cow position: | chrX:35061432-35060985 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 7 |
| Conread position: | 42-428 |
| Cow position: | chrX:39384618-39385014 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 120 |
| Conread position: | 44-428 |
| Cow position: | chrX:36093501-36093109 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 123 |
| Conread position: | 45-338 |
| Cow position: | chrX:38535856-38536146 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 216 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 222, 20 |
| Conread position: | 46-505 |
| Cow position: | chrX:35053473-35053920 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 19 |
| Conread position: | 62-192 |
| Cow position: | chrX:19049947-19049819 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 65-177 |
| Cow position: | chrX:33626630-33626520 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 65-478 |
| Cow position: | chrX:40835713-40835309 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 29 |
| Conread position: | 65-497 |
| Cow position: | chrX:34705110-34704691 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 282, 88 |
| Conread position: | 96-272 |
| Cow position: | chrX:25261648-25261824 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 29, 41 |
| Conread position: | 128-291 |
| Cow position: | chrX:2325160-2325322 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 128-413 |
| Cow position: | chrX:40318509-40318775 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 132, 139 |
| Conread position: | 129-493 |
| Cow position: | chrX:35065340-35064981 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 112, 31 |
| Conread position: | 132-374 |
| Cow position: | chrX:39417973-39417746 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 142-491 |
| Cow position: | chrX:38531741-38532097 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 257 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 151-495 |
| Cow position: | chrX:29312771-29313109 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 93 |
| Conread position: | 155-384 |
| Cow position: | chrX:40252545-40252320 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 163-360 |
| Cow position: | chrX:35986067-35986266 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 104, 78 |
| Conread position: | 171-374 |
| Cow position: | chrX:19049603-19049402 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 69 |
| Conread position: | 206-470 |
| Cow position: | chrX:40313732-40313477 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 207-507 |
| Cow position: | chrX:33626062-33625780 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 240, 33 |
| Conread position: | 254-500 |
| Cow position: | chrX:6999095-6998861 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 194, 7 |
| Conread position: | 266-498 |
| Cow position: | chrX:6816450-6816229 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 267-415 |
| Cow position: | chrX:33179226-33179079 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 278-429 |
| Cow position: | chrX:35676633-35676780 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 298-424 |
| Cow position: | chrX:25263005-25263123 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.