Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048G17.3 |
| Conread position: | 373-583 |
| Cow position: | chr12:5797360-5797570 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 378-583 |
| Cow position: | chr12:1223147-1223354 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 84 |
| Conread position: | 393-586 |
| Cow position: | chr12:18094075-18093877 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 76, 151 |
| Conread position: | 406-588 |
| Cow position: | chr12:7274532-7274714 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 88 |
| Conread position: | 415-588 |
| Cow position: | chr12:18768909-18769084 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 10 |
| Conread position: | 419-555 |
| Cow position: | chr12:9780113-9780252 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 420-588 |
| Cow position: | chr12:36109101-36109277 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 421-581 |
| Cow position: | chr12:16205880-16205716 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 421-583 |
| Cow position: | chr12:18966600-18966766 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 423-583 |
| Cow position: | chr12:15984592-15984756 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 23, 86 |
| Conread position: | 424-588 |
| Cow position: | chr12:29448800-29448631 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 426-588 |
| Cow position: | chr12:15230667-15230830 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 25, 95 |
| Conread position: | 427-570 |
| Cow position: | chr12:44391755-44391613 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 427-583 |
| Cow position: | chr12:43671854-43671693 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 428-583 |
| Cow position: | chr12:7645659-7645818 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 428-588 |
| Cow position: | chr12:25933830-25933670 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 5 |
| Conread position: | 430-588 |
| Cow position: | chr12:5538824-5538980 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 12, 55 |
| Conread position: | 430-588 |
| Cow position: | chr12:16850767-16850928 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 431-588 |
| Cow position: | chr12:11080951-11081114 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 432-587 |
| Cow position: | chr12:27055749-27055592 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 31, 98 |
| Conread position: | 433-588 |
| Cow position: | chr12:5658601-5658759 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 133 |
| Conread position: | 434-588 |
| Cow position: | chr12:1883394-1883543 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 435-583 |
| Cow position: | chr12:5497686-5497835 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 435-583 |
| Cow position: | chr12:30065076-30064926 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 75 |
| Conread position: | 435-588 |
| Cow position: | chr12:34090265-34090114 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 57 |
| Conread position: | 436-574 |
| Cow position: | chr12:24681961-24681818 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 436-588 |
| Cow position: | chr12:13657611-13657758 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 438-583 |
| Cow position: | chr12:44057657-44057506 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 441-588 |
| Cow position: | chr12:4583079-4582931 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 452-588 |
| Cow position: | chr12:31198887-31198752 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 96, 22 |
| Conread position: | 458-583 |
| Cow position: | chr12:17262969-17262842 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 459-583 |
| Cow position: | chr12:24204198-24204323 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 462-583 |
| Cow position: | chr12:14855922-14855801 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-583 |
| Cow position: | chr12:28017157-28017036 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-587 |
| Cow position: | chr12:27038631-27038756 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 119, 110 |
| Conread position: | 462-588 |
| Cow position: | chr12:7996522-7996398 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 66 |
| Conread position: | 462-588 |
| Cow position: | chr12:12331398-12331525 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 462-588 |
| Cow position: | chr12:32413627-32413501 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-588 |
| Cow position: | chr12:39781229-39781354 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 463-575 |
| Cow position: | chr12:29691086-29691198 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 18 |
| Conread position: | 463-583 |
| Cow position: | chr12:14325162-14325280 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 463-583 |
| Cow position: | chr12:45541818-45541698 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-588 |
| Cow position: | chr12:30596579-30596452 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 464-588 |
| Cow position: | chr12:31528746-31528870 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 466-587 |
| Cow position: | chr12:8980945-8981067 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 468-583 |
| Cow position: | chr12:21829178-21829064 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.