Cow genome map

Conread name: Ss1.1-Pig4-TMW8048G17.3

Conread position: 394-588
Cow position: chr13:8822632-8822824 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 35, 15

Conread position: 400-583
Cow position: chr13:55592266-55592080 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 41, 103

Conread position: 402-588
Cow position: chr13:10932331-10932512 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 62, 10

Conread position: 403-587
Cow position: chr13:54094581-54094771 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 15, 28

Conread position: 403-588
Cow position: chr13:1958779-1958969 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 11, 30

Conread position: 408-579
Cow position: chr13:22784066-22783896 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 15

Conread position: 409-586
Cow position: chr13:17991435-17991618 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 9, 0

Conread position: 409-588
Cow position: chr13:21628096-21627924 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 414-588
Cow position: chr13:32718081-32717903 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 55, 118

Conread position: 416-573
Cow position: chr13:53858276-53858115 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 53, 28

Conread position: 417-583
Cow position: chr13:50738958-50739125 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 55, 16

Conread position: 418-583
Cow position: chr13:20156274-20156443 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 17

Conread position: 418-588
Cow position: chr13:54564851-54564675 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 50, 0

Conread position: 419-583
Cow position: chr13:18665529-18665696 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 419-583
Cow position: chr13:37435112-37435274 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 42

Conread position: 419-588
Cow position: chr13:11794239-11794402 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 419-588
Cow position: chr13:62267436-62267262 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 23

Conread position: 420-586
Cow position: chr13:11768256-11768084 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 0

Conread position: 421-581
Cow position: chr13:16327461-16327624 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 91

Conread position: 421-586
Cow position: chr13:29820417-29820247 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 48, 0

Conread position: 421-588
Cow position: chr13:33281801-33281967 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 14, 0

Conread position: 422-583
Cow position: chr13:25206908-25207070 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 423-587
Cow position: chr13:1558722-1558554 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 46, 99

Conread position: 423-588
Cow position: chr13:9083206-9083046 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 142, 12

Conread position: 423-588
Cow position: chr13:20180213-20180375 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 424-582
Cow position: chr13:62169749-62169591 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 70

Conread position: 424-583
Cow position: chr13:9802861-9803024 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 425-578
Cow position: chr13:26507731-26507886 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 0

Conread position: 425-582
Cow position: chr13:18550798-18550960 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 425-583
Cow position: chr13:30271117-30271279 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 44, 88

Conread position: 425-583
Cow position: chr13:34191920-34191758 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 88

Conread position: 425-588
Cow position: chr13:6621796-6621630 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 10

Conread position: 425-588
Cow position: chr13:12745466-12745633 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 117

Conread position: 425-588
Cow position: chr13:47188237-47188398 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 74, 0

Conread position: 426-588
Cow position: chr13:57341496-57341331 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 38, 122

Conread position: 428-588
Cow position: chr13:52569201-52569041 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 119, 18

Conread position: 429-587
Cow position: chr13:31852566-31852723 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 6

Conread position: 429-588
Cow position: chr13:15091113-15090949 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 14, 131

Conread position: 430-583
Cow position: chr13:661838-661684 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 95

Conread position: 430-583
Cow position: chr13:7010274-7010428 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 25, 115

Conread position: 430-588
Cow position: chr13:26523138-26522975 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 25

Conread position: 431-583
Cow position: chr13:11463550-11463396 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 97

Conread position: 432-559
Cow position: chr13:57888485-57888358 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 432-579
Cow position: chr13:46291456-46291611 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 29, 23

Conread position: 433-583
Cow position: chr13:46430492-46430348 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 433-588
Cow position: chr13:12521977-12521817 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 433-588
Cow position: chr13:47502907-47502753 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 68

Conread position: 434-583
Cow position: chr13:46353706-46353557 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 18

Conread position: 435-568
Cow position: chr13:23048006-23047867 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 435-571
Cow position: chr13:24239012-24238879 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 57, 26

Conread position: 435-579
Cow position: chr13:10753891-10754033 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 435-583
Cow position: chr13:14220307-14220450 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 435-583
Cow position: chr13:55618310-55618161 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 66

Conread position: 435-588
Cow position: chr13:32657186-32657341 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 62, 20

Conread position: 436-587
Cow position: chr13:17796172-17796328 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 90

Conread position: 436-588
Cow position: chr13:20466481-20466323 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 437-588
Cow position: chr13:58762795-58762639 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 58

Conread position: 441-588
Cow position: chr13:12233644-12233488 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 54

Conread position: 442-576
Cow position: chr13:50824000-50823867 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 130, 0

Conread position: 442-588
Cow position: chr13:32904590-32904740 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 27, 47

Conread position: 442-588
Cow position: chr13:56674155-56674010 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 445-583
Cow position: chr13:49200454-49200593 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 103, 0

Conread position: 446-583
Cow position: chr13:17346626-17346767 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 448-588
Cow position: chr13:11834656-11834517 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 81, 43

Conread position: 453-579
Cow position: chr13:9501761-9501635 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 21, 87

Conread position: 458-586
Cow position: chr13:34689763-34689891 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 462-574
Cow position: chr13:56270402-56270289 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 85, 0

Conread position: 462-574
Cow position: chr13:56281070-56281183 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 85, 0

Conread position: 462-579
Cow position: chr13:13296221-13296108 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 462-583
Cow position: chr13:32167475-32167355 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 462-583
Cow position: chr13:52748959-52748838 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 462-585
Cow position: chr13:22887154-22887030 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 121, 0

Conread position: 462-585
Cow position: chr13:25057990-25058113 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 462-587
Cow position: chr13:43167196-43167071 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 462-588
Cow position: chr13:34995494-34995367 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 86, 0

Conread position: 462-588
Cow position: chr13:54815076-54814950 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 463-581
Cow position: chr13:46284771-46284654 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 463-583
Cow position: chr13:22082226-22082346 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 463-588
Cow position: chr13:21403572-21403448 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 106
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 27

Conread position: 464-588
Cow position: chr13:24280094-24280218 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 25

Conread position: 464-588
Cow position: chr13:58621107-58620986 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 465-587
Cow position: chr13:23265571-23265693 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 465-588
Cow position: chr13:11171076-11171197 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 67, 26

Conread position: 467-580
Cow position: chr13:11514117-11514230 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 467-581
Cow position: chr13:26508324-26508438 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 98
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 467-585
Cow position: chr13:58347926-58348043 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 102
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 41, 0

Conread position: 467-587
Cow position: chr13:22075511-22075630 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 103
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 110, 0

Conread position: 468-583
Cow position: chr13:14099271-14099155 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 26, 0

Conread position: 469-565
Cow position: chr13:13540918-13540823 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 74, 0

Conread position: 473-583
Cow position: chr13:35719291-35719181 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 473-586
Cow position: chr13:58615034-58615147 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 481-583
Cow position: chr13:33955171-33955069 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 481-588
Cow position: chr13:3016319-3016212 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.