Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048G17.3 |
| Conread position: | 386-588 |
| Cow position: | chr14:39058386-39058599 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 388-588 |
| Cow position: | chr14:44861421-44861218 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 31, 143 |
| Conread position: | 391-585 |
| Cow position: | chr14:21017930-21018130 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 405-583 |
| Cow position: | chr14:28565309-28565487 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 410-583 |
| Cow position: | chr14:36081078-36080901 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 411-581 |
| Cow position: | chr14:8518149-8517977 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 415-583 |
| Cow position: | chr14:7582602-7582436 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 54, 46 |
| Conread position: | 415-583 |
| Cow position: | chr14:13928283-13928109 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 416-588 |
| Cow position: | chr14:47604456-47604281 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 417-588 |
| Cow position: | chr14:2189478-2189651 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 52, 118 |
| Conread position: | 421-588 |
| Cow position: | chr14:18979345-18979183 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 14 |
| Conread position: | 425-583 |
| Cow position: | chr14:26960563-26960402 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 425-588 |
| Cow position: | chr14:20795629-20795791 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 10 |
| Conread position: | 426-587 |
| Cow position: | chr14:28565155-28565316 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 87 |
| Conread position: | 426-588 |
| Cow position: | chr14:21691423-21691257 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 426-588 |
| Cow position: | chr14:47600555-47600391 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 427-580 |
| Cow position: | chr14:27103937-27104093 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 428-583 |
| Cow position: | chr14:47138929-47138774 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-588 |
| Cow position: | chr14:26153415-26153252 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 36, 156 |
| Conread position: | 429-588 |
| Cow position: | chr14:44031887-44032054 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 431-584 |
| Cow position: | chr14:47519895-47519738 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 99 |
| Conread position: | 431-588 |
| Cow position: | chr14:26108489-26108651 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 11, 59 |
| Conread position: | 432-588 |
| Cow position: | chr14:26493728-26493892 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 10, 63 |
| Conread position: | 433-571 |
| Cow position: | chr14:15040069-15039932 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 73 |
| Conread position: | 433-583 |
| Cow position: | chr14:20701960-20701802 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 433-588 |
| Cow position: | chr14:29481525-29481366 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 147 |
| Conread position: | 435-550 |
| Cow position: | chr14:7613923-7614042 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 74 |
| Conread position: | 436-583 |
| Cow position: | chr14:6985091-6984948 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 90 |
| Conread position: | 436-583 |
| Cow position: | chr14:35700290-35700442 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 437-583 |
| Cow position: | chr14:21369231-21369381 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 437-584 |
| Cow position: | chr14:11581928-11582074 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 438-583 |
| Cow position: | chr14:37333564-37333712 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 439-588 |
| Cow position: | chr14:47551405-47551259 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 440-583 |
| Cow position: | chr14:8875178-8875035 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 442-588 |
| Cow position: | chr14:10692393-10692250 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 456-585 |
| Cow position: | chr14:5400471-5400601 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 458-583 |
| Cow position: | chr14:10935816-10935692 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 458-588 |
| Cow position: | chr14:6582722-6582860 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 462-567 |
| Cow position: | chr14:38688340-38688238 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 462-583 |
| Cow position: | chr14:20284046-20284168 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 462-583 |
| Cow position: | chr14:37624877-37624756 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-584 |
| Cow position: | chr14:16969199-16969080 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 462-588 |
| Cow position: | chr14:6441800-6441927 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 462-588 |
| Cow position: | chr14:7648127-7648000 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 462-588 |
| Cow position: | chr14:19023004-19022880 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 462-588 |
| Cow position: | chr14:20045444-20045569 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 462-588 |
| Cow position: | chr14:28605125-28605251 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-588 |
| Cow position: | chr14:37679110-37678985 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 462-588 |
| Cow position: | chr14:43031689-43031815 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 463-585 |
| Cow position: | chr14:43565985-43565863 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 465-583 |
| Cow position: | chr14:45849321-45849202 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 465-588 |
| Cow position: | chr14:23107218-23107342 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 466-588 |
| Cow position: | chr14:21084237-21084359 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 477-583 |
| Cow position: | chr14:10936188-10936295 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 491-583 |
| Cow position: | chr14:31399517-31399609 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 500-588 |
| Cow position: | chr14:28327193-28327105 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 76 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.