Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048G17.3 |
| Conread position: | 382-588 |
| Cow position: | chr16:1440666-1440456 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 18, 53 |
| Conread position: | 389-587 |
| Cow position: | chr16:16946312-16946512 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 78 |
| Conread position: | 394-587 |
| Cow position: | chr16:44580852-44581047 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 398-571 |
| Cow position: | chr16:55070299-55070480 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 398-583 |
| Cow position: | chr16:44898547-44898723 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 399-588 |
| Cow position: | chr16:10617640-10617830 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 407-588 |
| Cow position: | chr16:228283-228471 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 93 |
| Conread position: | 413-587 |
| Cow position: | chr16:52577658-52577483 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 13, 78 |
| Conread position: | 416-588 |
| Cow position: | chr16:37719354-37719183 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 132, 27 |
| Conread position: | 418-583 |
| Cow position: | chr16:18427379-18427213 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 419-570 |
| Cow position: | chr16:13027071-13027225 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 6 |
| Conread position: | 419-583 |
| Cow position: | chr16:25464249-25464085 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 419-584 |
| Cow position: | chr16:30639526-30639358 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 150 |
| Conread position: | 419-588 |
| Cow position: | chr16:11772048-11772224 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 24, 165 |
| Conread position: | 420-587 |
| Cow position: | chr16:10611437-10611599 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 64, 5 |
| Conread position: | 420-588 |
| Cow position: | chr16:50114385-50114210 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 421-553 |
| Cow position: | chr16:23065879-23066016 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 423-583 |
| Cow position: | chr16:28454105-28454263 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 425-582 |
| Cow position: | chr16:31222728-31222568 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 425-588 |
| Cow position: | chr16:15806144-15805979 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 111 |
| Conread position: | 426-588 |
| Cow position: | chr16:20956521-20956361 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 426-588 |
| Cow position: | chr16:45693334-45693173 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 43, 68 |
| Conread position: | 427-588 |
| Cow position: | chr16:33121793-33121633 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 6 |
| Conread position: | 428-588 |
| Cow position: | chr16:47116255-47116094 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 429-585 |
| Cow position: | chr16:19977144-19976991 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 13, 41 |
| Conread position: | 430-588 |
| Cow position: | chr16:11085194-11085358 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 45 |
| Conread position: | 431-588 |
| Cow position: | chr16:43762316-43762475 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 432-586 |
| Cow position: | chr16:47368936-47368785 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 433-583 |
| Cow position: | chr16:19002907-19003062 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 433-588 |
| Cow position: | chr16:53267908-53267750 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 57 |
| Conread position: | 434-576 |
| Cow position: | chr16:20260655-20260514 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 32, 118 |
| Conread position: | 434-583 |
| Cow position: | chr16:16546251-16546102 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 435-587 |
| Cow position: | chr16:16055879-16056034 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 62 |
| Conread position: | 437-588 |
| Cow position: | chr16:56283125-56282971 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 78 |
| Conread position: | 439-588 |
| Cow position: | chr16:47192331-47192184 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 441-583 |
| Cow position: | chr16:11777033-11777175 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-585 |
| Cow position: | chr16:3566338-3566191 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 23, 116 |
| Conread position: | 441-588 |
| Cow position: | chr16:49321131-49320989 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 445-586 |
| Cow position: | chr16:39156267-39156408 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 448-583 |
| Cow position: | chr16:55586443-55586580 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 10, 117 |
| Conread position: | 462-571 |
| Cow position: | chr16:2618837-2618946 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-572 |
| Cow position: | chr16:4708751-4708861 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-573 |
| Cow position: | chr16:49122116-49122226 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 462-578 |
| Cow position: | chr16:52565569-52565454 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 462-583 |
| Cow position: | chr16:9407728-9407849 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-583 |
| Cow position: | chr16:9510724-9510845 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-583 |
| Cow position: | chr16:54515869-54515748 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-585 |
| Cow position: | chr16:10303600-10303723 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-585 |
| Cow position: | chr16:20664438-20664317 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 111, 43 |
| Conread position: | 462-585 |
| Cow position: | chr16:32837398-32837522 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 462-586 |
| Cow position: | chr16:31490465-31490342 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 462-586 |
| Cow position: | chr16:44693034-44693157 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 462-587 |
| Cow position: | chr16:27014051-27013925 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 22 |
| Conread position: | 462-588 |
| Cow position: | chr16:5511957-5511831 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 462-588 |
| Cow position: | chr16:5580465-5580338 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 462-588 |
| Cow position: | chr16:18557113-18557240 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 462-588 |
| Cow position: | chr16:36930168-36930292 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 462-588 |
| Cow position: | chr16:47909192-47909319 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 463-584 |
| Cow position: | chr16:28827028-28827150 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 463-586 |
| Cow position: | chr16:38621105-38620981 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 463-588 |
| Cow position: | chr16:23163426-23163551 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-588 |
| Cow position: | chr16:48493330-48493204 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 464-588 |
| Cow position: | chr16:23978285-23978409 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 496-587 |
| Cow position: | chr16:56104798-56104887 (view UCSC Genome Browser custom track) |
| Alignm length: | 92 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.