Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048G17.3 |
| Conread position: | 382-588 |
| Cow position: | chr17:2271267-2271064 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 34 |
| Conread position: | 384-585 |
| Cow position: | chr17:37414627-37414835 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 105 |
| Conread position: | 406-583 |
| Cow position: | chr17:33903675-33903853 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 417-588 |
| Cow position: | chr17:14278301-14278126 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 25 |
| Conread position: | 417-588 |
| Cow position: | chr17:38139751-38139573 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 72 |
| Conread position: | 419-587 |
| Cow position: | chr17:35387764-35387936 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 419-588 |
| Cow position: | chr17:1525588-1525759 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 419-588 |
| Cow position: | chr17:27819528-27819359 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 124, 24 |
| Conread position: | 420-584 |
| Cow position: | chr17:39012953-39012787 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 420-587 |
| Cow position: | chr17:7861462-7861638 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 421-588 |
| Cow position: | chr17:8094078-8093911 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 425-583 |
| Cow position: | chr17:8831911-8832074 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 425-583 |
| Cow position: | chr17:26614502-26614663 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 112 |
| Conread position: | 425-583 |
| Cow position: | chr17:32457336-32457500 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 425-587 |
| Cow position: | chr17:30236422-30236261 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 42, 107 |
| Conread position: | 425-588 |
| Cow position: | chr17:3619855-3620022 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 425-588 |
| Cow position: | chr17:8215419-8215256 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 426-587 |
| Cow position: | chr17:7614145-7614314 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 16, 128 |
| Conread position: | 426-588 |
| Cow position: | chr17:10314652-10314485 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 426-588 |
| Cow position: | chr17:11655611-11655441 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 426-588 |
| Cow position: | chr17:29270636-29270792 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 427-587 |
| Cow position: | chr17:36400327-36400167 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 427-588 |
| Cow position: | chr17:19891850-19891688 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 77 |
| Conread position: | 427-588 |
| Cow position: | chr17:27505326-27505161 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 42, 81 |
| Conread position: | 433-588 |
| Cow position: | chr17:7163668-7163831 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 434-585 |
| Cow position: | chr17:37043197-37043349 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 435-583 |
| Cow position: | chr17:27781281-27781135 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 435-585 |
| Cow position: | chr17:143958-144113 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 133 |
| Conread position: | 435-587 |
| Cow position: | chr17:728139-728288 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 435-588 |
| Cow position: | chr17:31798227-31798384 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 437-587 |
| Cow position: | chr17:39016317-39016164 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 441-579 |
| Cow position: | chr17:10271699-10271565 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 441-583 |
| Cow position: | chr17:37138969-37138830 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 441-585 |
| Cow position: | chr17:21730082-21730232 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 441-588 |
| Cow position: | chr17:8279499-8279643 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 441-588 |
| Cow position: | chr17:36173751-36173909 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 458-583 |
| Cow position: | chr17:7595342-7595219 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 462-583 |
| Cow position: | chr17:9748934-9748812 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 462-583 |
| Cow position: | chr17:11826267-11826388 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-583 |
| Cow position: | chr17:33930349-33930228 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-585 |
| Cow position: | chr17:5381141-5381018 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 85, 59 |
| Conread position: | 462-587 |
| Cow position: | chr17:5041216-5041341 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 108 |
| Conread position: | 462-588 |
| Cow position: | chr17:1328787-1328662 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 462-588 |
| Cow position: | chr17:10221039-10220915 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 69 |
| Conread position: | 462-588 |
| Cow position: | chr17:34870270-34870144 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 464-588 |
| Cow position: | chr17:13715847-13715970 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 464-588 |
| Cow position: | chr17:24880928-24880804 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 465-588 |
| Cow position: | chr17:3706451-3706572 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 467-587 |
| Cow position: | chr17:23879341-23879461 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 467-588 |
| Cow position: | chr17:21373859-21373742 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.