Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048G17.3 |
| Conread position: | 374-573 |
| Cow position: | chr18:39503491-39503691 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 22, 11 |
| Conread position: | 389-588 |
| Cow position: | chr18:2438565-2438772 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 396-588 |
| Cow position: | chr18:20126923-20127115 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 412-581 |
| Cow position: | chr18:16448709-16448543 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 417-583 |
| Cow position: | chr18:24363896-24364064 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 53, 78 |
| Conread position: | 418-588 |
| Cow position: | chr18:29949910-29949740 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 419-588 |
| Cow position: | chr18:45961108-45961281 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 77 |
| Conread position: | 419-588 |
| Cow position: | chr18:51587382-51587553 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 420-583 |
| Cow position: | chr18:14520194-14520030 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 128, 10 |
| Conread position: | 423-583 |
| Cow position: | chr18:35767329-35767165 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 90 |
| Conread position: | 423-588 |
| Cow position: | chr18:26373081-26372911 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 425-583 |
| Cow position: | chr18:30566410-30566564 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 425-585 |
| Cow position: | chr18:55696868-55697031 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 425-586 |
| Cow position: | chr18:48717787-48717944 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 427-583 |
| Cow position: | chr18:10101642-10101484 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 130 |
| Conread position: | 427-585 |
| Cow position: | chr18:15831446-15831604 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 155, 69 |
| Conread position: | 428-588 |
| Cow position: | chr18:42061226-42061067 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 429-583 |
| Cow position: | chr18:51412495-51412341 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 430-587 |
| Cow position: | chr18:44408565-44408408 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 431-588 |
| Cow position: | chr18:44493333-44493495 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 432-583 |
| Cow position: | chr18:7409152-7409306 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 433-588 |
| Cow position: | chr18:22411460-22411621 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 9, 69 |
| Conread position: | 434-575 |
| Cow position: | chr18:51241175-51241029 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 35, 79 |
| Conread position: | 435-588 |
| Cow position: | chr18:29796281-29796438 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 436-583 |
| Cow position: | chr18:36478475-36478330 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 436-584 |
| Cow position: | chr18:25970499-25970640 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 436-588 |
| Cow position: | chr18:15689429-15689276 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 436-588 |
| Cow position: | chr18:21706038-21706193 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 436-588 |
| Cow position: | chr18:50700832-50700678 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 437-538 |
| Cow position: | chr18:50928195-50928094 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 83 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 440-586 |
| Cow position: | chr18:48458813-48458667 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-583 |
| Cow position: | chr18:5756121-5755973 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 441-583 |
| Cow position: | chr18:6158051-6157909 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-588 |
| Cow position: | chr18:19364075-19363926 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 441-588 |
| Cow position: | chr18:32909184-32909041 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 458-585 |
| Cow position: | chr18:39210893-39211021 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 462-583 |
| Cow position: | chr18:21094988-21095108 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 462-585 |
| Cow position: | chr18:11362366-11362242 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 462-588 |
| Cow position: | chr18:248698-248825 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 462-588 |
| Cow position: | chr18:16298222-16298096 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-588 |
| Cow position: | chr18:16841935-16842068 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 462-588 |
| Cow position: | chr18:24855727-24855853 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-588 |
| Cow position: | chr18:38126333-38126457 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 463-588 |
| Cow position: | chr18:16726764-16726639 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 463-588 |
| Cow position: | chr18:43113833-43113954 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 464-583 |
| Cow position: | chr18:44400561-44400442 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 464-588 |
| Cow position: | chr18:33842970-33843094 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 464-588 |
| Cow position: | chr18:35608040-35607916 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 468-583 |
| Cow position: | chr18:24221681-24221566 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 470-579 |
| Cow position: | chr18:16134205-16134314 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 78, 20 |
| Conread position: | 471-583 |
| Cow position: | chr18:23425026-23424914 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 104, 108 |
Show alignments to all cow chromosomes.