Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048G17.3 |
| Conread position: | 393-588 |
| Cow position: | chr19:56008524-56008711 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 409-587 |
| Cow position: | chr19:31126995-31126811 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 415-583 |
| Cow position: | chr19:2342668-2342497 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 417-588 |
| Cow position: | chr19:26003430-26003603 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 419-583 |
| Cow position: | chr19:21284892-21285064 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 419-583 |
| Cow position: | chr19:31380819-31380988 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 419-586 |
| Cow position: | chr19:46498116-46497952 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 419-588 |
| Cow position: | chr19:5648483-5648651 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 93 |
| Conread position: | 420-588 |
| Cow position: | chr19:38871252-38871081 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 421-579 |
| Cow position: | chr19:39222930-39223088 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 38, 83 |
| Conread position: | 421-588 |
| Cow position: | chr19:25594342-25594176 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 423-583 |
| Cow position: | chr19:48479161-48478995 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 19, 72 |
| Conread position: | 425-588 |
| Cow position: | chr19:28842178-28842347 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 427-587 |
| Cow position: | chr19:54817355-54817521 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 427-588 |
| Cow position: | chr19:9387814-9387648 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 8, 141 |
| Conread position: | 427-588 |
| Cow position: | chr19:40026755-40026917 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 68 |
| Conread position: | 428-586 |
| Cow position: | chr19:11876524-11876685 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 11, 103 |
| Conread position: | 429-583 |
| Cow position: | chr19:19662214-19662061 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 429-583 |
| Cow position: | chr19:25271241-25271401 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 430-583 |
| Cow position: | chr19:39250432-39250281 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 431-588 |
| Cow position: | chr19:11759054-11759217 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 24, 63 |
| Conread position: | 433-588 |
| Cow position: | chr19:12040793-12040630 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 435-574 |
| Cow position: | chr19:35083976-35084115 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 435-583 |
| Cow position: | chr19:2280476-2280626 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 34, 95 |
| Conread position: | 435-588 |
| Cow position: | chr19:35345099-35344939 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 440-560 |
| Cow position: | chr19:32989265-32989385 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 116, 110 |
| Conread position: | 440-583 |
| Cow position: | chr19:2770852-2770999 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 441-580 |
| Cow position: | chr19:19246934-19246797 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 441-585 |
| Cow position: | chr19:15936995-15936848 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 109 |
| Conread position: | 442-588 |
| Cow position: | chr19:36461364-36461516 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 443-588 |
| Cow position: | chr19:46306183-46306325 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 452-588 |
| Cow position: | chr19:5986385-5986247 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 458-583 |
| Cow position: | chr19:24689425-24689299 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 458-588 |
| Cow position: | chr19:42896612-42896472 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 459-583 |
| Cow position: | chr19:11147483-11147604 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 462-583 |
| Cow position: | chr19:7838910-7839027 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 462-583 |
| Cow position: | chr19:31614247-31614124 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 462-583 |
| Cow position: | chr19:53738472-53738352 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 462-588 |
| Cow position: | chr19:1713002-1713128 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 462-588 |
| Cow position: | chr19:22932410-22932536 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-588 |
| Cow position: | chr19:30935636-30935758 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 462-588 |
| Cow position: | chr19:31984510-31984636 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 30 |
| Conread position: | 462-588 |
| Cow position: | chr19:38025831-38025705 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-588 |
| Cow position: | chr19:42102459-42102584 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 109 |
| Conread position: | 462-588 |
| Cow position: | chr19:42416320-42416440 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 463-588 |
| Cow position: | chr19:4824844-4824970 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 464-588 |
| Cow position: | chr19:6735089-6735215 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 464-588 |
| Cow position: | chr19:47783626-47783753 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 39 |
| Conread position: | 467-583 |
| Cow position: | chr19:55236619-55236503 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 468-583 |
| Cow position: | chr19:3123924-3124034 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 470-588 |
| Cow position: | chr19:35064060-35064181 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 472-583 |
| Cow position: | chr19:36318434-36318323 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.