Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048G17.3 |
| Conread position: | 376-575 |
| Cow position: | chr29:44550745-44550539 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 390-588 |
| Cow position: | chr29:35442238-35442441 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 41 |
| Conread position: | 399-580 |
| Cow position: | chr29:32080759-32080576 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 407-588 |
| Cow position: | chr29:39023127-39023318 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 411-583 |
| Cow position: | chr29:11071480-11071658 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 415-588 |
| Cow position: | chr29:4367923-4367747 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 77 |
| Conread position: | 416-588 |
| Cow position: | chr29:10206817-10206644 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 417-579 |
| Cow position: | chr29:21534249-21534415 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 25, 99 |
| Conread position: | 418-583 |
| Cow position: | chr29:27613606-27613769 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 419-583 |
| Cow position: | chr29:7407710-7407877 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 419-588 |
| Cow position: | chr29:19607329-19607503 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 17 |
| Conread position: | 420-574 |
| Cow position: | chr29:19683-19526 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 420-588 |
| Cow position: | chr29:29302466-29302637 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 421-588 |
| Cow position: | chr29:21265954-21265782 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 79 |
| Conread position: | 425-572 |
| Cow position: | chr29:36196412-36196268 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 425-588 |
| Cow position: | chr29:708943-709112 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 7 |
| Conread position: | 425-588 |
| Cow position: | chr29:11366424-11366260 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 13, 115 |
| Conread position: | 425-588 |
| Cow position: | chr29:13634111-13634276 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 38, 72 |
| Conread position: | 426-581 |
| Cow position: | chr29:7663082-7663240 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 125 |
| Conread position: | 427-574 |
| Cow position: | chr29:42686530-42686683 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 427-587 |
| Cow position: | chr29:21012158-21012320 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 40, 152 |
| Conread position: | 428-588 |
| Cow position: | chr29:9662204-9662037 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 429-559 |
| Cow position: | chr29:942805-942676 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 117, 6 |
| Conread position: | 433-568 |
| Cow position: | chr29:6149935-6150075 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 433-581 |
| Cow position: | chr29:19734844-19734690 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 433-588 |
| Cow position: | chr29:5616686-5616847 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 61 |
| Conread position: | 434-583 |
| Cow position: | chr29:7129369-7129521 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 435-587 |
| Cow position: | chr29:13126943-13127100 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 435-588 |
| Cow position: | chr29:11005910-11005756 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 56 |
| Conread position: | 435-588 |
| Cow position: | chr29:18695423-18695274 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 435-588 |
| Cow position: | chr29:18963914-18963756 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 60 |
| Conread position: | 436-585 |
| Cow position: | chr29:5976612-5976764 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 437-587 |
| Cow position: | chr29:15042622-15042472 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 139, 143 |
| Conread position: | 438-588 |
| Cow position: | chr29:19907528-19907378 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 439-588 |
| Cow position: | chr29:9512431-9512281 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 440-583 |
| Cow position: | chr29:26129664-26129521 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-583 |
| Cow position: | chr29:11766888-11766744 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 28, 105 |
| Conread position: | 441-588 |
| Cow position: | chr29:2274671-2274818 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 442-583 |
| Cow position: | chr29:7054583-7054442 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 24, 84 |
| Conread position: | 442-588 |
| Cow position: | chr29:21675563-21675417 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 444-585 |
| Cow position: | chr29:18073108-18072963 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 458-583 |
| Cow position: | chr29:16054979-16055105 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 458-585 |
| Cow position: | chr29:26299121-26298994 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 84, 90 |
| Conread position: | 458-588 |
| Cow position: | chr29:29559570-29559698 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 90, 36 |
| Conread position: | 461-583 |
| Cow position: | chr29:14758712-14758836 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 462-581 |
| Cow position: | chr29:8794500-8794379 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 462-586 |
| Cow position: | chr29:6772277-6772156 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 99 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 462-587 |
| Cow position: | chr29:942971-942842 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 462-588 |
| Cow position: | chr29:22895875-22895748 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 462-588 |
| Cow position: | chr29:23742118-23742240 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 462-588 |
| Cow position: | chr29:25426511-25426635 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 462-588 |
| Cow position: | chr29:26985375-26985248 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 464-583 |
| Cow position: | chr29:13554283-13554163 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 464-588 |
| Cow position: | chr29:1340928-1340805 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 475-583 |
| Cow position: | chr29:7637424-7637532 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-583 |
| Cow position: | chr29:18068038-18067932 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 492-588 |
| Cow position: | chr29:36435548-36435451 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
Show alignments to all cow chromosomes.