Cow genome map

Conread name: Ss1.1-Pig4-TMW8048G17.3

Conread position: 381-587
Cow position: chr3:50281544-50281752 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 88, 44

Conread position: 384-585
Cow position: chr3:51146471-51146669 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 147
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 46, 31

Conread position: 394-583
Cow position: chr3:5419671-5419859 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 38, 0

Conread position: 407-588
Cow position: chr3:63146971-63147151 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 130
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 25

Conread position: 410-588
Cow position: chr3:23111330-23111513 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 0

Conread position: 410-588
Cow position: chr3:74913028-74912852 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 172, 15

Conread position: 411-588
Cow position: chr3:12255651-12255480 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 413-579
Cow position: chr3:30839422-30839251 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 72

Conread position: 415-567
Cow position: chr3:38253250-38253096 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 20, 115

Conread position: 417-583
Cow position: chr3:34315651-34315817 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 52, 16

Conread position: 418-583
Cow position: chr3:891435-891269 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 13

Conread position: 418-584
Cow position: chr3:61411294-61411124 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 51, 17

Conread position: 419-583
Cow position: chr3:9630052-9629889 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 50, 14

Conread position: 419-583
Cow position: chr3:74611732-74611568 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 13, 40

Conread position: 419-588
Cow position: chr3:26493065-26493231 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 420-587
Cow position: chr3:54881942-54881767 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 32

Conread position: 420-588
Cow position: chr3:9074173-9074346 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 138
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 48, 0

Conread position: 422-588
Cow position: chr3:41550210-41550375 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 105, 0

Conread position: 423-585
Cow position: chr3:43591065-43590894 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 423-588
Cow position: chr3:25075997-25076167 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 423-588
Cow position: chr3:27532493-27532655 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 425-583
Cow position: chr3:84112411-84112576 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 425-584
Cow position: chr3:41718557-41718395 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 425-585
Cow position: chr3:22953718-22953881 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 44, 131

Conread position: 425-585
Cow position: chr3:62628095-62628262 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 425-588
Cow position: chr3:17633880-17634043 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 40, 17

Conread position: 425-588
Cow position: chr3:26740873-26741032 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 43, 0

Conread position: 426-588
Cow position: chr3:8746065-8746232 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 16, 70

Conread position: 426-588
Cow position: chr3:48629427-48629590 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 144, 0

Conread position: 426-588
Cow position: chr3:51492951-51492784 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 94

Conread position: 426-588
Cow position: chr3:73741703-73741870 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 158

Conread position: 427-584
Cow position: chr3:25027566-25027405 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 427-588
Cow position: chr3:15221353-15221518 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 27, 0

Conread position: 428-586
Cow position: chr3:11919875-11920032 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 40, 7

Conread position: 429-583
Cow position: chr3:25091195-25091038 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 86

Conread position: 429-583
Cow position: chr3:61323001-61322845 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 8, 0

Conread position: 429-588
Cow position: chr3:54340258-54340422 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 13, 80

Conread position: 430-582
Cow position: chr3:4329478-4329325 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 12, 0

Conread position: 430-584
Cow position: chr3:62798626-62798781 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 117, 0

Conread position: 430-588
Cow position: chr3:15654987-15655147 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 12, 0

Conread position: 430-588
Cow position: chr3:48211666-48211510 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 29, 86

Conread position: 432-588
Cow position: chr3:23091818-23091976 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 37, 103

Conread position: 433-583
Cow position: chr3:55991710-55991864 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 27, 79

Conread position: 433-587
Cow position: chr3:36100989-36100838 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 92, 0

Conread position: 434-588
Cow position: chr3:18213980-18214139 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 435-559
Cow position: chr3:44838410-44838287 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 72, 0

Conread position: 435-571
Cow position: chr3:56693383-56693250 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 113, 52

Conread position: 435-585
Cow position: chr3:58447910-58448062 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 43, 71

Conread position: 435-586
Cow position: chr3:8752942-8752789 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 32, 95

Conread position: 435-586
Cow position: chr3:57829927-57830079 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 59, 0

Conread position: 435-588
Cow position: chr3:53588231-53588384 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 32, 24

Conread position: 435-588
Cow position: chr3:68262911-68262763 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 134, 21

Conread position: 436-583
Cow position: chr3:22271300-22271450 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 19, 60

Conread position: 436-583
Cow position: chr3:58291736-58291888 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 436-583
Cow position: chr3:58632712-58632567 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 436-588
Cow position: chr3:26088840-26089001 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 437-588
Cow position: chr3:36204700-36204552 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 61, 18

Conread position: 441-585
Cow position: chr3:31932954-31933098 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 142, 28

Conread position: 441-586
Cow position: chr3:31247812-31247667 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 21, 30

Conread position: 441-588
Cow position: chr3:5601017-5601167 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 29, 65

Conread position: 441-588
Cow position: chr3:37485650-37485797 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 106, 130

Conread position: 441-588
Cow position: chr3:51780845-51780991 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 67

Conread position: 441-588
Cow position: chr3:59608648-59608502 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 25, 33

Conread position: 458-588
Cow position: chr3:14505785-14505915 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 107
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 458-588
Cow position: chr3:73436311-73436441 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 461-588
Cow position: chr3:24300487-24300360 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 461-588
Cow position: chr3:46094948-46094823 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 89, 0

Conread position: 462-569
Cow position: chr3:44643643-44643540 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 462-583
Cow position: chr3:5845043-5844924 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 462-583
Cow position: chr3:20092400-20092521 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 93
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 462-583
Cow position: chr3:24538998-24538877 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 462-583
Cow position: chr3:39910934-39911054 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 462-583
Cow position: chr3:70354113-70354233 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 462-587
Cow position: chr3:49131936-49132063 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 462-588
Cow position: chr3:3736425-3736298 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 55, 0

Conread position: 462-588
Cow position: chr3:22171499-22171377 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 462-588
Cow position: chr3:34085930-34086055 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 70, 0

Conread position: 462-588
Cow position: chr3:35278696-35278575 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 462-588
Cow position: chr3:61116727-61116854 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 463-583
Cow position: chr3:55373444-55373565 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 100, 0

Conread position: 463-584
Cow position: chr3:10431724-10431603 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 463-588
Cow position: chr3:66707945-66708067 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 107
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 0

Conread position: 464-588
Cow position: chr3:20471243-20471365 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 466-587
Cow position: chr3:8457776-8457655 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 467-583
Cow position: chr3:25251025-25250908 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 467-583
Cow position: chr3:74205688-74205804 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.