Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048G17.3 |
| Conread position: | 388-588 |
| Cow position: | chr7:34028032-34027833 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 34, 98 |
| Conread position: | 402-588 |
| Cow position: | chr7:4264285-4264467 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 402-588 |
| Cow position: | chr7:57537265-57537458 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 405-585 |
| Cow position: | chr7:47874728-47874919 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 97 |
| Conread position: | 412-572 |
| Cow position: | chr7:5221095-5220932 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 414-583 |
| Cow position: | chr7:64139900-64140071 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 82 |
| Conread position: | 415-588 |
| Cow position: | chr7:40192992-40192813 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 14, 19 |
| Conread position: | 415-588 |
| Cow position: | chr7:59713954-59713782 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 417-583 |
| Cow position: | chr7:7486543-7486708 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 417-583 |
| Cow position: | chr7:25684807-25684974 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 12, 71 |
| Conread position: | 417-583 |
| Cow position: | chr7:50255875-50255708 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 6 |
| Conread position: | 418-583 |
| Cow position: | chr7:55076470-55076629 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 419-566 |
| Cow position: | chr7:34199892-34199741 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 79 |
| Conread position: | 419-583 |
| Cow position: | chr7:35504782-35504613 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 419-583 |
| Cow position: | chr7:58704013-58703849 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 50, 93 |
| Conread position: | 419-588 |
| Cow position: | chr7:25104607-25104436 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 420-583 |
| Cow position: | chr7:55714310-55714142 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 423-583 |
| Cow position: | chr7:53005582-53005419 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 424-583 |
| Cow position: | chr7:12754921-12755085 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 424-583 |
| Cow position: | chr7:19423795-19423631 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 425-579 |
| Cow position: | chr7:62471025-62470868 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 78 |
| Conread position: | 425-588 |
| Cow position: | chr7:43215747-43215576 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 44, 156 |
| Conread position: | 426-583 |
| Cow position: | chr7:51321966-51321806 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 426-588 |
| Cow position: | chr7:19880811-19880980 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 426-588 |
| Cow position: | chr7:23256631-23256789 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 426-588 |
| Cow position: | chr7:26195576-26195739 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 427-581 |
| Cow position: | chr7:1732972-1733128 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 28, 103 |
| Conread position: | 427-582 |
| Cow position: | chr7:40261720-40261875 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 427-583 |
| Cow position: | chr7:20108765-20108923 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 427-588 |
| Cow position: | chr7:57311842-57311681 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 428-588 |
| Cow position: | chr7:59246183-59246021 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 429-588 |
| Cow position: | chr7:37445095-37444930 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 13, 109 |
| Conread position: | 431-562 |
| Cow position: | chr7:60722614-60722745 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 431-583 |
| Cow position: | chr7:53743671-53743830 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 431-588 |
| Cow position: | chr7:19399454-19399611 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 432-588 |
| Cow position: | chr7:22802499-22802657 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 433-573 |
| Cow position: | chr7:3133943-3134088 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 433-588 |
| Cow position: | chr7:21545144-21545298 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 434-588 |
| Cow position: | chr7:25445623-25445462 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 21, 82 |
| Conread position: | 435-583 |
| Cow position: | chr7:25914267-25914420 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 435-583 |
| Cow position: | chr7:41728165-41728014 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 34, 120 |
| Conread position: | 435-588 |
| Cow position: | chr7:24521473-24521320 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 436-583 |
| Cow position: | chr7:50401601-50401752 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 436-585 |
| Cow position: | chr7:46984916-46984770 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 436-588 |
| Cow position: | chr7:13587403-13587247 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 101 |
| Conread position: | 438-586 |
| Cow position: | chr7:25857253-25857403 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 141 |
| Conread position: | 442-588 |
| Cow position: | chr7:41913485-41913632 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 23, 132 |
| Conread position: | 445-571 |
| Cow position: | chr7:40140269-40140144 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 445-588 |
| Cow position: | chr7:67839551-67839408 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 115 |
| Conread position: | 446-584 |
| Cow position: | chr7:61681427-61681566 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 446-587 |
| Cow position: | chr7:8073889-8074033 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 446-588 |
| Cow position: | chr7:67111705-67111848 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 447-586 |
| Cow position: | chr7:10345262-10345400 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 447-588 |
| Cow position: | chr7:22981546-22981404 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 102 |
| Conread position: | 450-583 |
| Cow position: | chr7:14044176-14044043 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 452-588 |
| Cow position: | chr7:43234242-43234379 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 458-579 |
| Cow position: | chr7:48443356-48443476 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 458-580 |
| Cow position: | chr7:58490278-58490155 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 458-588 |
| Cow position: | chr7:24667580-24667449 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 32 |
| Conread position: | 458-588 |
| Cow position: | chr7:32277732-32277603 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 458-588 |
| Cow position: | chr7:45956125-45955994 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 459-588 |
| Cow position: | chr7:17922473-17922346 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 462-567 |
| Cow position: | chr7:31224217-31224322 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 462-584 |
| Cow position: | chr7:12424738-12424615 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 462-585 |
| Cow position: | chr7:664063-664189 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 462-586 |
| Cow position: | chr7:1350165-1350288 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 462-588 |
| Cow position: | chr7:26466933-26466809 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 462-588 |
| Cow position: | chr7:51086348-51086221 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 463-588 |
| Cow position: | chr7:3748737-3748861 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 463-588 |
| Cow position: | chr7:62610482-62610356 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 466-584 |
| Cow position: | chr7:57260062-57260178 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 467-583 |
| Cow position: | chr7:39603508-39603392 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 478-583 |
| Cow position: | chr7:8826989-8826885 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 479-588 |
| Cow position: | chr7:11872430-11872539 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.