Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048L06.5 |
| Conread position: | 440-760 |
| Cow position: | chr14:41457970-41458282 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 14 |
| Conread position: | 444-767 |
| Cow position: | chr14:41091524-41091199 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 87, 75 |
| Conread position: | 446-710 |
| Cow position: | chr14:44586127-44586381 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 23 |
| Conread position: | 448-686 |
| Cow position: | chr14:38389199-38388964 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 448-727 |
| Cow position: | chr14:18248373-18248091 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 71 |
| Conread position: | 448-754 |
| Cow position: | chr14:2826410-2826709 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 167 |
| Conread position: | 448-755 |
| Cow position: | chr14:39338134-39337822 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 448-757 |
| Cow position: | chr14:30271442-30271140 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 16, 66 |
| Conread position: | 448-760 |
| Cow position: | chr14:38866560-38866880 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 16, 172 |
| Conread position: | 448-761 |
| Cow position: | chr14:35526955-35527250 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 448-769 |
| Cow position: | chr14:18531541-18531866 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 448-780 |
| Cow position: | chr14:35370902-35370575 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 448-781 |
| Cow position: | chr14:19792949-19792622 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 448-785 |
| Cow position: | chr14:17076654-17076989 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 17, 129 |
| Conread position: | 448-786 |
| Cow position: | chr14:24706977-24706648 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 448-788 |
| Cow position: | chr14:10863600-10863259 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 15, 77 |
| Conread position: | 448-792 |
| Cow position: | chr14:44714191-44713854 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 207, 15 |
| Conread position: | 448-797 |
| Cow position: | chr14:2486085-2485740 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 170, 16 |
| Conread position: | 449-795 |
| Cow position: | chr14:24519756-24520104 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 168 |
| Conread position: | 450-756 |
| Cow position: | chr14:1734772-1734468 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 14, 164 |
| Conread position: | 450-781 |
| Cow position: | chr14:40989903-40990237 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 450-794 |
| Cow position: | chr14:37610613-37610954 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 13, 107 |
| Conread position: | 453-781 |
| Cow position: | chr14:37798046-37797722 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 454-692 |
| Cow position: | chr14:40880219-40880463 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 122 |
| Conread position: | 454-715 |
| Cow position: | chr14:18980130-18980390 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 9, 156 |
| Conread position: | 454-769 |
| Cow position: | chr14:27572084-27572394 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 105, 93 |
| Conread position: | 454-781 |
| Cow position: | chr14:11725844-11726156 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 98 |
| Conread position: | 455-702 |
| Cow position: | chr14:19459388-19459138 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 160 |
| Conread position: | 456-789 |
| Cow position: | chr14:9463453-9463775 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 457-759 |
| Cow position: | chr14:1283409-1283709 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 198, 61 |
| Conread position: | 463-744 |
| Cow position: | chr14:25632403-25632681 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 113, 77 |
| Conread position: | 463-756 |
| Cow position: | chr14:37208213-37208504 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 88, 18 |
| Conread position: | 464-752 |
| Cow position: | chr14:31658306-31658586 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 125, 14 |
| Conread position: | 468-759 |
| Cow position: | chr14:24525412-24525705 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 171 |
| Conread position: | 471-748 |
| Cow position: | chr14:21114408-21114123 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 7, 144 |
| Conread position: | 473-745 |
| Cow position: | chr14:16190957-16191226 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 182, 63 |
| Conread position: | 473-769 |
| Cow position: | chr14:25477101-25477387 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 475-724 |
| Cow position: | chr14:2017331-2017084 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 180, 111 |
| Conread position: | 479-721 |
| Cow position: | chr14:37064157-37064396 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 94, 123 |
| Conread position: | 479-739 |
| Cow position: | chr14:39322309-39322570 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 40 |
| Conread position: | 479-760 |
| Cow position: | chr14:33183976-33184259 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 12, 136 |
| Conread position: | 481-769 |
| Cow position: | chr14:25854052-25853768 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 488-757 |
| Cow position: | chr14:12070694-12070959 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 489-754 |
| Cow position: | chr14:41096085-41095825 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 489-757 |
| Cow position: | chr14:39627274-39627547 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 103 |
| Conread position: | 489-760 |
| Cow position: | chr14:14242273-14242005 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 490-715 |
| Cow position: | chr14:26933231-26933005 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 86, 124 |
| Conread position: | 490-755 |
| Cow position: | chr14:20036632-20036368 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 83, 29 |
| Conread position: | 490-763 |
| Cow position: | chr14:17667822-17667551 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 83, 112 |
| Conread position: | 497-756 |
| Cow position: | chr14:37790331-37790580 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 497-796 |
| Cow position: | chr14:35003017-35003302 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 159, 70 |
| Conread position: | 500-750 |
| Cow position: | chr14:41921226-41921473 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 109 |
| Conread position: | 501-781 |
| Cow position: | chr14:7964381-7964658 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 70, 39 |
| Conread position: | 502-755 |
| Cow position: | chr14:33872576-33872827 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 31, 72 |
| Conread position: | 504-726 |
| Cow position: | chr14:34496981-34496760 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 153, 14 |
| Conread position: | 505-768 |
| Cow position: | chr14:27860758-27860495 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 40 |
| Conread position: | 508-767 |
| Cow position: | chr14:33269602-33269342 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 520-724 |
| Cow position: | chr14:3182516-3182716 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 522-791 |
| Cow position: | chr14:20803503-20803243 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 29 |
| Conread position: | 523-768 |
| Cow position: | chr14:38700627-38700383 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 525-781 |
| Cow position: | chr14:22194623-22194367 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 48, 91 |
| Conread position: | 526-769 |
| Cow position: | chr14:23271201-23270958 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 544-781 |
| Cow position: | chr14:34662111-34661874 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 545-774 |
| Cow position: | chr14:20913184-20913412 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 73 |
| Conread position: | 547-769 |
| Cow position: | chr14:39505157-39504934 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 69 |
| Conread position: | 556-767 |
| Cow position: | chr14:34619031-34619238 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 99, 24 |
| Conread position: | 561-766 |
| Cow position: | chr14:21691541-21691746 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 12, 53 |
| Conread position: | 567-781 |
| Cow position: | chr14:13384997-13384786 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 90, 46 |
| Conread position: | 573-753 |
| Cow position: | chr14:41634779-41634958 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 573-781 |
| Cow position: | chr14:47482440-47482233 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 574-756 |
| Cow position: | chr14:42596034-42595850 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 63, 41 |
| Conread position: | 574-769 |
| Cow position: | chr14:20318215-20318409 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 85, 98 |
| Conread position: | 575-772 |
| Cow position: | chr14:5051819-5052018 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 25, 153 |
| Conread position: | 577-781 |
| Cow position: | chr14:18430000-18429798 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 584-769 |
| Cow position: | chr14:37352755-37352570 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 71, 30 |
| Conread position: | 592-767 |
| Cow position: | chr14:1658096-1658270 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 633-780 |
| Cow position: | chr14:18242015-18242164 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 637-779 |
| Cow position: | chr14:44995174-44995032 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 119 |
Show alignments to all cow chromosomes.