Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048L06.5 |
| Conread position: | 445-757 |
| Cow position: | chr20:13063746-13064056 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 33, 145 |
| Conread position: | 447-755 |
| Cow position: | chr20:1679067-1678763 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 126, 17 |
| Conread position: | 448-699 |
| Cow position: | chr20:3092437-3092688 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 448-752 |
| Cow position: | chr20:38942308-38942615 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 72 |
| Conread position: | 448-756 |
| Cow position: | chr20:23066722-23066421 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 448-757 |
| Cow position: | chr20:13415576-13415868 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 128, 67 |
| Conread position: | 448-774 |
| Cow position: | chr20:34407357-34407038 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 18, 124 |
| Conread position: | 448-779 |
| Cow position: | chr20:27002394-27002714 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 448-785 |
| Cow position: | chr20:28607829-28607490 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 16, 72 |
| Conread position: | 448-801 |
| Cow position: | chr20:26567671-26567336 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 128, 15 |
| Conread position: | 448-804 |
| Cow position: | chr20:12575606-12575250 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 47 |
| Conread position: | 449-722 |
| Cow position: | chr20:9125264-9124989 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 16, 30 |
| Conread position: | 449-781 |
| Cow position: | chr20:2946036-2946363 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 15, 45 |
| Conread position: | 450-785 |
| Cow position: | chr20:9269339-9269659 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 16, 92 |
| Conread position: | 453-750 |
| Cow position: | chr20:24697217-24697514 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 22, 58 |
| Conread position: | 454-779 |
| Cow position: | chr20:5782413-5782742 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 454-781 |
| Cow position: | chr20:36789685-36789356 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 216 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 11, 98 |
| Conread position: | 455-702 |
| Cow position: | chr20:27063654-27063896 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 458-750 |
| Cow position: | chr20:5096518-5096221 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 255 |
| Conread position: | 459-746 |
| Cow position: | chr20:27442131-27441844 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 94, 60 |
| Conread position: | 463-752 |
| Cow position: | chr20:2057839-2057546 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 463-769 |
| Cow position: | chr20:23142942-23142641 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 192, 38 |
| Conread position: | 463-781 |
| Cow position: | chr20:42282843-42283159 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 39 |
| Conread position: | 463-802 |
| Cow position: | chr20:27195443-27195782 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 80, 92 |
| Conread position: | 464-786 |
| Cow position: | chr20:20068011-20068324 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 191, 62 |
| Conread position: | 466-797 |
| Cow position: | chr20:24831380-24831057 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 52 |
| Conread position: | 471-708 |
| Cow position: | chr20:16850262-16850500 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 102, 145 |
| Conread position: | 471-768 |
| Cow position: | chr20:8295191-8295483 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 201 |
| Conread position: | 474-749 |
| Cow position: | chr20:11719119-11718838 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 140 |
| Conread position: | 479-786 |
| Cow position: | chr20:6849823-6849524 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 63, 117 |
| Conread position: | 486-769 |
| Cow position: | chr20:36345788-36345509 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 487-756 |
| Cow position: | chr20:8093213-8092940 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 488-755 |
| Cow position: | chr20:8596544-8596813 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 127 |
| Conread position: | 489-750 |
| Cow position: | chr20:10517631-10517889 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 68, 223 |
| Conread position: | 489-754 |
| Cow position: | chr20:34840706-34840442 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 97, 75 |
| Conread position: | 489-769 |
| Cow position: | chr20:1049953-1049673 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 84, 125 |
| Conread position: | 489-772 |
| Cow position: | chr20:35717633-35717348 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 80, 174 |
| Conread position: | 489-780 |
| Cow position: | chr20:33356117-33356403 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 490-750 |
| Cow position: | chr20:8661625-8661879 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 158, 83 |
| Conread position: | 492-757 |
| Cow position: | chr20:26313544-26313281 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 74, 124 |
| Conread position: | 494-781 |
| Cow position: | chr20:25268263-25267978 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 74, 122 |
| Conread position: | 497-692 |
| Cow position: | chr20:5362902-5362709 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 500-781 |
| Cow position: | chr20:26494540-26494818 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 155, 79 |
| Conread position: | 503-772 |
| Cow position: | chr20:30181799-30182058 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 70, 15 |
| Conread position: | 505-754 |
| Cow position: | chr20:12835537-12835289 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 507-780 |
| Cow position: | chr20:5805027-5804755 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 149, 98 |
| Conread position: | 513-759 |
| Cow position: | chr20:10723851-10723604 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 60, 101 |
| Conread position: | 520-769 |
| Cow position: | chr20:8476263-8476517 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 524-781 |
| Cow position: | chr20:34311888-34312145 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 52, 90 |
| Conread position: | 529-780 |
| Cow position: | chr20:19303851-19303598 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 113 |
| Conread position: | 534-785 |
| Cow position: | chr20:5197696-5197447 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 113, 108 |
| Conread position: | 540-795 |
| Cow position: | chr20:5726180-5726436 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 78 |
| Conread position: | 548-773 |
| Cow position: | chr20:34287387-34287618 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 596-721 |
| Cow position: | chr20:7397123-7397248 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 608-769 |
| Cow position: | chr20:9289956-9289796 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 608-774 |
| Cow position: | chr20:5532549-5532383 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 46, 148 |
| Conread position: | 611-778 |
| Cow position: | chr20:26498396-26498226 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 0 |
Show alignments to all cow chromosomes.