Cow genome map

Conread name: Ss1.1-Pig4-TMW8048L06.5

Conread position: 444-786
Cow position: chr21:11326949-11326615 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 132, 53

Conread position: 447-779
Cow position: chr21:12440621-12440956 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 206
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 14, 171

Conread position: 448-639
Cow position: chr21:1613872-1613681 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 70

Conread position: 448-752
Cow position: chr21:170840-171142 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 199
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 69

Conread position: 448-753
Cow position: chr21:15933349-15933674 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 213
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 186

Conread position: 448-753
Cow position: chr21:35779528-35779226 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 16, 100

Conread position: 448-754
Cow position: chr21:16480941-16480633 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 15, 71

Conread position: 448-755
Cow position: chr21:13532219-13531911 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 221
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 79, 15

Conread position: 448-756
Cow position: chr21:17794527-17794219 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 209
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 17, 139

Conread position: 448-760
Cow position: chr21:17168575-17168897 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 206
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 47

Conread position: 448-761
Cow position: chr21:4178037-4177723 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 207
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 15, 184

Conread position: 448-769
Cow position: chr21:28173585-28173271 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 215
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 77, 15

Conread position: 448-781
Cow position: chr21:29653607-29653944 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 233
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 16, 151

Conread position: 448-781
Cow position: chr21:34548007-34547678 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 85, 6

Conread position: 448-781
Cow position: chr21:34618054-34618390 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 225
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 16, 162

Conread position: 448-794
Cow position: chr21:46598859-46598518 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 236
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 120, 16

Conread position: 448-795
Cow position: chr21:36070598-36070251 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 230
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 15, 5

Conread position: 449-786
Cow position: chr21:42659471-42659133 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 213
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 15, 162

Conread position: 450-710
Cow position: chr21:13533603-13533868 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 70

Conread position: 450-748
Cow position: chr21:2906228-2905928 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 14, 133

Conread position: 450-755
Cow position: chr21:35643483-35643183 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 202
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 14, 33

Conread position: 450-756
Cow position: chr21:10156582-10156278 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 207
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 14, 133

Conread position: 450-756
Cow position: chr21:39931792-39931486 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 211
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 15, 237

Conread position: 450-759
Cow position: chr21:20234600-20234294 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 202
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 19, 165

Conread position: 450-759
Cow position: chr21:40083475-40083768 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 17, 67

Conread position: 450-780
Cow position: chr21:4860487-4860163 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 33

Conread position: 450-791
Cow position: chr21:39385521-39385186 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 231
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 14, 89

Conread position: 451-759
Cow position: chr21:7696941-7697247 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 49, 12

Conread position: 451-804
Cow position: chr21:1263939-1264285 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 231
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 68, 78

Conread position: 452-749
Cow position: chr21:12313978-12314279 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 13, 166

Conread position: 452-750
Cow position: chr21:25179902-25179607 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 190
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 53

Conread position: 454-769
Cow position: chr21:21126552-21126858 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 10, 98

Conread position: 455-769
Cow position: chr21:13275559-13275869 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 207
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 71, 8

Conread position: 455-774
Cow position: chr21:5593307-5592981 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 221
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 9, 24

Conread position: 455-794
Cow position: chr21:36620474-36620144 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 234
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 138

Conread position: 456-753
Cow position: chr21:2206671-2206376 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 203
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 9, 218

Conread position: 456-769
Cow position: chr21:41538873-41539192 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 210
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 46, 98

Conread position: 457-754
Cow position: chr21:22846363-22846655 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 197
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 24

Conread position: 457-756
Cow position: chr21:25630433-25630729 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 116, 79

Conread position: 463-756
Cow position: chr21:30327811-30328093 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 110, 18

Conread position: 463-768
Cow position: chr21:37176011-37176311 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 193
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 196, 112

Conread position: 464-677
Cow position: chr21:22491626-22491834 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 109, 144

Conread position: 466-752
Cow position: chr21:18052606-18052329 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 75, 7

Conread position: 468-769
Cow position: chr21:18336745-18336443 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 215
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 41, 69

Conread position: 468-803
Cow position: chr21:42633960-42633633 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 213
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 105, 137

Conread position: 472-732
Cow position: chr21:11243597-11243853 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 30

Conread position: 473-697
Cow position: chr21:36023933-36024154 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 157
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 162, 74

Conread position: 473-734
Cow position: chr21:26421972-26421708 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 180
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 182, 139

Conread position: 473-794
Cow position: chr21:15468605-15468295 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 185, 94

Conread position: 473-797
Cow position: chr21:29078864-29078550 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 217
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 181, 40

Conread position: 474-750
Cow position: chr21:28006515-28006234 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 186
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 87

Conread position: 474-785
Cow position: chr21:35815939-35816249 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 210
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 115, 96

Conread position: 477-707
Cow position: chr21:29634291-29634524 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 51, 41

Conread position: 479-754
Cow position: chr21:43320572-43320846 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 182
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 94, 163

Conread position: 479-781
Cow position: chr21:40178089-40178391 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 199
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 94, 135

Conread position: 487-754
Cow position: chr21:12271308-12271570 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 87, 0

Conread position: 487-760
Cow position: chr21:4461120-4460846 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 39, 11

Conread position: 488-760
Cow position: chr21:39764018-39763751 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 182
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 170, 79

Conread position: 489-724
Cow position: chr21:20774676-20774905 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 159
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 87, 20

Conread position: 489-781
Cow position: chr21:8219562-8219854 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 195
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 47, 23

Conread position: 489-781
Cow position: chr21:43352198-43351906 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 198
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 31

Conread position: 489-785
Cow position: chr21:38943946-38943663 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 199
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 30

Conread position: 489-791
Cow position: chr21:876129-876431 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 203
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 84, 29

Conread position: 490-781
Cow position: chr21:34591476-34591182 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 189
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 38, 28

Conread position: 491-781
Cow position: chr21:31449351-31449061 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 185
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 49, 27

Conread position: 500-784
Cow position: chr21:15944220-15944492 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 157, 63

Conread position: 505-767
Cow position: chr21:6297683-6297945 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 173
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 27, 14

Conread position: 505-774
Cow position: chr21:39081318-39081048 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 178
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 66, 13

Conread position: 511-788
Cow position: chr21:13133243-13132960 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 65, 94

Conread position: 512-778
Cow position: chr21:42908300-42908036 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 183
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 61, 102

Conread position: 514-778
Cow position: chr21:41866495-41866230 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 180

Conread position: 518-723
Cow position: chr21:34394787-34394582 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 98

Conread position: 520-756
Cow position: chr21:9574440-9574207 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 51, 94

Conread position: 526-802
Cow position: chr21:27551709-27551440 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 196
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 51, 70

Conread position: 528-781
Cow position: chr21:31500005-31500271 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 186
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 131, 85

Conread position: 540-691
Cow position: chr21:26182892-26182740 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 33, 74

Conread position: 560-802
Cow position: chr21:15913426-15913664 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 95, 25

Conread position: 576-781
Cow position: chr21:41189153-41189361 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 37

Conread position: 585-792
Cow position: chr21:28202306-28202510 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 74, 10

Conread position: 588-780
Cow position: chr21:15319816-15319626 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 67, 25

Conread position: 604-724
Cow position: chr21:40648006-40648126 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 56, 32

Conread position: 606-781
Cow position: chr21:20928080-20927904 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 607-769
Cow position: chr21:20315798-20315961 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 52, 0

Conread position: 608-781
Cow position: chr21:16981399-16981573 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 47, 0

Conread position: 644-781
Cow position: chr21:2138602-2138466 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 79

Show alignments to all cow chromosomes.