Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048L06.5 |
| Conread position: | 439-728 |
| Cow position: | chr24:16171540-16171835 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 30, 288 |
| Conread position: | 445-792 |
| Cow position: | chr24:27892175-27891834 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 446-771 |
| Cow position: | chr24:18914123-18914450 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 18, 26 |
| Conread position: | 447-778 |
| Cow position: | chr24:37454044-37453715 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 448-740 |
| Cow position: | chr24:25607735-25608018 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 448-750 |
| Cow position: | chr24:25265252-25265551 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 16, 213 |
| Conread position: | 448-753 |
| Cow position: | chr24:23492032-23492337 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 48 |
| Conread position: | 448-756 |
| Cow position: | chr24:15416506-15416199 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 16, 93 |
| Conread position: | 448-756 |
| Cow position: | chr24:19073981-19074286 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 448-756 |
| Cow position: | chr24:20289613-20289302 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 13, 111 |
| Conread position: | 448-756 |
| Cow position: | chr24:34197401-34197708 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 448-757 |
| Cow position: | chr24:22912576-22912883 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 15, 27 |
| Conread position: | 448-757 |
| Cow position: | chr24:23823740-23823434 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 125, 16 |
| Conread position: | 448-760 |
| Cow position: | chr24:29390836-29390533 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 81 |
| Conread position: | 448-774 |
| Cow position: | chr24:16537137-16536818 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 16, 72 |
| Conread position: | 448-780 |
| Cow position: | chr24:23140408-23140083 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 232 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 448-791 |
| Cow position: | chr24:37716112-37715780 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 448-793 |
| Cow position: | chr24:37514572-37514229 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 8, 63 |
| Conread position: | 448-796 |
| Cow position: | chr24:37856762-37856413 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 16, 64 |
| Conread position: | 449-769 |
| Cow position: | chr24:25100740-25100416 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 449-791 |
| Cow position: | chr24:43777774-43778116 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 16, 89 |
| Conread position: | 450-677 |
| Cow position: | chr24:42202988-42202764 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 13 |
| Conread position: | 450-768 |
| Cow position: | chr24:12193879-12193562 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 164 |
| Conread position: | 450-781 |
| Cow position: | chr24:6237126-6237444 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 450-781 |
| Cow position: | chr24:23988131-23988463 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 160 |
| Conread position: | 450-785 |
| Cow position: | chr24:37434311-37433984 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 451-785 |
| Cow position: | chr24:31185556-31185889 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 13, 126 |
| Conread position: | 451-791 |
| Cow position: | chr24:6203609-6203948 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 13, 126 |
| Conread position: | 452-775 |
| Cow position: | chr24:18381435-18381112 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 13, 164 |
| Conread position: | 456-745 |
| Cow position: | chr24:16207574-16207295 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 8, 64 |
| Conread position: | 463-754 |
| Cow position: | chr24:29369666-29369375 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 38, 155 |
| Conread position: | 463-756 |
| Cow position: | chr24:16652270-16652558 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 8 |
| Conread position: | 463-789 |
| Cow position: | chr24:24123810-24123500 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 464-748 |
| Cow position: | chr24:24799571-24799285 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 84, 91 |
| Conread position: | 468-755 |
| Cow position: | chr24:3907918-3907641 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 72, 110 |
| Conread position: | 468-785 |
| Cow position: | chr24:29071481-29071161 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 59, 91 |
| Conread position: | 470-684 |
| Cow position: | chr24:37712259-37712473 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 185, 138 |
| Conread position: | 473-752 |
| Cow position: | chr24:44875592-44875319 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 482-781 |
| Cow position: | chr24:24455341-24455647 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 486-754 |
| Cow position: | chr24:34219983-34219719 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 171, 62 |
| Conread position: | 489-756 |
| Cow position: | chr24:18712915-18713174 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 166, 82 |
| Conread position: | 489-779 |
| Cow position: | chr24:37230016-37230305 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 87, 173 |
| Conread position: | 490-785 |
| Cow position: | chr24:25894459-25894755 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 94, 124 |
| Conread position: | 490-786 |
| Cow position: | chr24:16303312-16303021 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 37, 29 |
| Conread position: | 491-747 |
| Cow position: | chr24:38444483-38444736 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 494-730 |
| Cow position: | chr24:5947055-5946821 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 494-747 |
| Cow position: | chr24:40339154-40338898 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 49, 116 |
| Conread position: | 500-774 |
| Cow position: | chr24:18846638-18846915 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 507-802 |
| Cow position: | chr24:37566160-37566449 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 66, 102 |
| Conread position: | 514-797 |
| Cow position: | chr24:38263935-38264215 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 526-760 |
| Cow position: | chr24:29043814-29044044 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 69 |
| Conread position: | 527-755 |
| Cow position: | chr24:24626689-24626461 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 536-785 |
| Cow position: | chr24:42959262-42959509 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 557-774 |
| Cow position: | chr24:36039636-36039420 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 57 |
| Conread position: | 575-769 |
| Cow position: | chr24:5877185-5876991 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 38 |
| Conread position: | 591-753 |
| Cow position: | chr24:36862841-36863003 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 593-797 |
| Cow position: | chr24:32959712-32959915 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 187, 20 |
| Conread position: | 608-781 |
| Cow position: | chr24:37574186-37574012 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 608-785 |
| Cow position: | chr24:19907423-19907599 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.