Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048L06.5 |
| Conread position: | 448-633 |
| Cow position: | chr27:16474407-16474592 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 125, 103 |
| Conread position: | 448-725 |
| Cow position: | chr27:18062539-18062258 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 168 |
| Conread position: | 448-747 |
| Cow position: | chr27:10119721-10120013 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 15, 6 |
| Conread position: | 448-748 |
| Cow position: | chr27:18973215-18973515 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 16, 170 |
| Conread position: | 448-753 |
| Cow position: | chr27:13180069-13180377 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 17, 169 |
| Conread position: | 448-769 |
| Cow position: | chr27:25638279-25638602 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 448-777 |
| Cow position: | chr27:18528093-18527758 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 448-790 |
| Cow position: | chr27:9122098-9121753 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 18, 175 |
| Conread position: | 450-755 |
| Cow position: | chr27:21103181-21103491 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 450-755 |
| Cow position: | chr27:21259753-21259454 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 207, 75 |
| Conread position: | 450-769 |
| Cow position: | chr27:11677819-11677501 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 450-793 |
| Cow position: | chr27:9436611-9436958 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 70 |
| Conread position: | 454-774 |
| Cow position: | chr27:9484857-9485187 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 70, 78 |
| Conread position: | 455-760 |
| Cow position: | chr27:22244873-22245177 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 8, 155 |
| Conread position: | 455-774 |
| Cow position: | chr27:14998677-14998360 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 463-724 |
| Cow position: | chr27:24249189-24248935 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 167, 104 |
| Conread position: | 473-802 |
| Cow position: | chr27:14351126-14351439 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 103, 75 |
| Conread position: | 475-781 |
| Cow position: | chr27:14870129-14870429 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 96, 43 |
| Conread position: | 494-755 |
| Cow position: | chr27:24066219-24066472 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 160, 7 |
| Conread position: | 494-756 |
| Cow position: | chr27:11634281-11634020 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 79, 121 |
| Conread position: | 494-756 |
| Cow position: | chr27:17049599-17049339 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 79, 10 |
| Conread position: | 494-756 |
| Cow position: | chr27:27582089-27582352 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 83, 16 |
| Conread position: | 496-789 |
| Cow position: | chr27:15468330-15468042 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 23 |
| Conread position: | 497-781 |
| Cow position: | chr27:3531501-3531221 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 161, 104 |
| Conread position: | 500-777 |
| Cow position: | chr27:28895578-28895854 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 155, 77 |
| Conread position: | 500-804 |
| Cow position: | chr27:15509132-15509436 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 502-720 |
| Cow position: | chr27:24167673-24167893 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 521-747 |
| Cow position: | chr27:25876095-25876320 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 93 |
| Conread position: | 575-781 |
| Cow position: | chr27:9674993-9674793 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 605-756 |
| Cow position: | chr27:16493364-16493211 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 92 |
Show alignments to all cow chromosomes.