Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8048L06.5 |
| Conread position: | 444-786 |
| Cow position: | chr28:24226485-24226822 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 53 |
| Conread position: | 445-756 |
| Cow position: | chr28:13366015-13366306 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 445-797 |
| Cow position: | chr28:7603562-7603209 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 18, 74 |
| Conread position: | 448-681 |
| Cow position: | chr28:4078827-4078596 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 125, 15 |
| Conread position: | 448-724 |
| Cow position: | chr28:22273216-22272953 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 63 |
| Conread position: | 448-745 |
| Cow position: | chr28:24672832-24673118 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 75, 15 |
| Conread position: | 448-756 |
| Cow position: | chr28:2140143-2140445 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 151 |
| Conread position: | 448-756 |
| Cow position: | chr28:9083852-9084157 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 448-756 |
| Cow position: | chr28:31356214-31356520 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 16, 50 |
| Conread position: | 448-759 |
| Cow position: | chr28:31176755-31177069 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 16, 150 |
| Conread position: | 448-760 |
| Cow position: | chr28:32633564-32633260 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 48 |
| Conread position: | 448-767 |
| Cow position: | chr28:1570947-1571260 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 15, 63 |
| Conread position: | 448-767 |
| Cow position: | chr28:22610200-22610514 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 17, 126 |
| Conread position: | 448-768 |
| Cow position: | chr28:5175252-5174934 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 120 |
| Conread position: | 448-769 |
| Cow position: | chr28:4386082-4385774 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 448-769 |
| Cow position: | chr28:21618365-21618687 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 16, 175 |
| Conread position: | 448-769 |
| Cow position: | chr28:23833533-23833834 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 93 |
| Conread position: | 448-781 |
| Cow position: | chr28:9917448-9917122 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 16, 150 |
| Conread position: | 448-786 |
| Cow position: | chr28:24318174-24317837 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 115 |
| Conread position: | 448-794 |
| Cow position: | chr28:26984041-26983691 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 448-794 |
| Cow position: | chr28:34009633-34009973 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 449-794 |
| Cow position: | chr28:1522361-1522701 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 148, 14 |
| Conread position: | 450-681 |
| Cow position: | chr28:19570188-19569948 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 454-750 |
| Cow position: | chr28:20772343-20772636 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 455-710 |
| Cow position: | chr28:25032168-25032423 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 10, 161 |
| Conread position: | 456-756 |
| Cow position: | chr28:10299922-10299638 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 51 |
| Conread position: | 456-781 |
| Cow position: | chr28:4195139-4195465 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 7, 65 |
| Conread position: | 457-769 |
| Cow position: | chr28:22411993-22411697 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 7, 40 |
| Conread position: | 457-774 |
| Cow position: | chr28:16769209-16769519 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 116, 156 |
| Conread position: | 460-712 |
| Cow position: | chr28:18844607-18844851 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 113, 135 |
| Conread position: | 463-755 |
| Cow position: | chr28:4441110-4441394 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 114, 88 |
| Conread position: | 470-785 |
| Cow position: | chr28:1288190-1287889 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 58 |
| Conread position: | 471-759 |
| Cow position: | chr28:29839223-29838943 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 474-767 |
| Cow position: | chr28:25912959-25912680 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 45 |
| Conread position: | 475-721 |
| Cow position: | chr28:11584980-11584738 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 25 |
| Conread position: | 479-756 |
| Cow position: | chr28:25005340-25005612 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 90, 115 |
| Conread position: | 479-781 |
| Cow position: | chr28:20147698-20147994 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 144 |
| Conread position: | 480-760 |
| Cow position: | chr28:31654623-31654895 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 47, 39 |
| Conread position: | 480-769 |
| Cow position: | chr28:11533133-11533422 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 88, 48 |
| Conread position: | 481-756 |
| Cow position: | chr28:13179034-13179305 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 484-753 |
| Cow position: | chr28:1428155-1428422 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 72 |
| Conread position: | 488-750 |
| Cow position: | chr28:14898150-14898407 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 488-802 |
| Cow position: | chr28:23096903-23097213 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 489-795 |
| Cow position: | chr28:20942062-20941763 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 87, 125 |
| Conread position: | 490-721 |
| Cow position: | chr28:22359209-22359438 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 168, 76 |
| Conread position: | 490-760 |
| Cow position: | chr28:5369269-5369533 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 46 |
| Conread position: | 490-781 |
| Cow position: | chr28:9126537-9126244 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 81, 259 |
| Conread position: | 490-785 |
| Cow position: | chr28:10867562-10867853 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 83, 124 |
| Conread position: | 494-780 |
| Cow position: | chr28:27355785-27355507 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 497-767 |
| Cow position: | chr28:20899338-20899070 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 500-748 |
| Cow position: | chr28:13142838-13142590 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 47, 55 |
| Conread position: | 500-804 |
| Cow position: | chr28:19360578-19360276 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 73, 34 |
| Conread position: | 502-800 |
| Cow position: | chr28:19340674-19340383 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 16 |
| Conread position: | 508-792 |
| Cow position: | chr28:27331070-27331351 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 509-707 |
| Cow position: | chr28:17379178-17378984 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 64, 105 |
| Conread position: | 511-715 |
| Cow position: | chr28:26341732-26341527 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 62, 96 |
| Conread position: | 522-774 |
| Cow position: | chr28:25043366-25043118 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 523-769 |
| Cow position: | chr28:22891666-22891431 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 81 |
| Conread position: | 529-756 |
| Cow position: | chr28:27885734-27885506 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 536-796 |
| Cow position: | chr28:29123409-29123146 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 224 |
| Conread position: | 540-781 |
| Cow position: | chr28:4164124-4163882 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 552-778 |
| Cow position: | chr28:2168773-2168545 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 63 |
| Conread position: | 553-769 |
| Cow position: | chr28:15324633-15324415 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 88 |
| Conread position: | 553-796 |
| Cow position: | chr28:23919107-23918867 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 18, 54 |
| Conread position: | 554-791 |
| Cow position: | chr28:7473334-7473569 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 573-781 |
| Cow position: | chr28:28505253-28505464 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 574-753 |
| Cow position: | chr28:8617911-8617739 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 584-769 |
| Cow position: | chr28:26392373-26392561 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 585-755 |
| Cow position: | chr28:29763199-29763369 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 142 |
| Conread position: | 588-781 |
| Cow position: | chr28:19467047-19467236 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 588-804 |
| Cow position: | chr28:22564340-22564556 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 590-756 |
| Cow position: | chr28:23688618-23688452 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 58, 106 |
| Conread position: | 601-796 |
| Cow position: | chr28:25959282-25959476 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 604-774 |
| Cow position: | chr28:11859599-11859767 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 607-773 |
| Cow position: | chr28:11078370-11078536 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 155 |
| Conread position: | 608-748 |
| Cow position: | chr28:10602048-10602188 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 609-785 |
| Cow position: | chr28:20374494-20374671 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 625-802 |
| Cow position: | chr28:4224759-4224936 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 159 |
Show alignments to all cow chromosomes.